Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02385 and BPUM_1325

See Amino acid alignment / Visit BSNT_02385 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:51
# Commandline: needle
#    -asequence dna-align/BSNT_02385___moeA.1.24716.seq
#    -bsequence dna-align/BPUM_1325___moeA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02385___moeA-BPUM_1325___moeA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02385___moeA-BPUM_1325___moeA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02385___moeA
# 2: BPUM_1325___moeA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1370
# Identity:     900/1370 (65.7%)
# Similarity:   900/1370 (65.7%)
# Gaps:         169/1370 (12.3%)
# Score: 2665.5
# 
#
#=======================================

BSNT_02385___      1 ATGCTGGAGAAAAGA--ACA-CCGATACCGGTAGACGAGGCAGTTCGGCG     47
                     .||.|||   |||||  .|| ||.||.||.|||.|.||.||..|||.|..
BPUM_1325___m      1 GTGATGG---AAAGACGTCAGCCAATTCCAGTACAAGAAGCCATTCAGAA     47

BSNT_02385___     48 TGTCTGCCATTTTCAAAAACAAGGTGAAACAGAATGGGTGGCGCTTGAAG     97
                     .|||...||.|.|.||||..|.||..||..||||||||||  .|||.|||
BPUM_1325___m     48 AGTCCATCAATATGAAAAGGATGGACAAGTAGAATGGGTG--CCTTTAAG     95

BSNT_02385___     98 --ACAGCCTTCATCGGTTTTTAGCCGAAGATATAACTGCGGATCACCACG    145
                       |.||||||.|..||||..|.||.||||||||....||.|||||..|.|
BPUM_1325___m     96 AAATAGCCTTGAAAGGTTCATTGCAGAAGATATTTTGGCAGATCATGATG    145

BSNT_02385___    146 TCCCTGCGTTTGATCGTTCGCCATACGATGGTTTTGC-----TGTCAGAG    190
                     |.|||||.|||||||||||.||.||.|||||||||||     .|.|||||
BPUM_1325___m    146 TTCCTGCATTTGATCGTTCCCCGTATGATGGTTTTGCACTTAGGGCAGAG    195

BSNT_02385___    191 CGTGCGATACGGCAGAAGCTTCACGTGAAAACCCAGTTCGGTTTGAAGTT    240
                          |||||...||||||.|||.|.||..|.||.|||....||||.||.
BPUM_1325___m    196 -----GATACAAAAGAAGCGTCAAGCGAGCATCCGGTTGAACTTGAGGTC    240

BSNT_02385___    241 ATTGACCATATTGGAGCAGGAGCAGTATCTGAAAAAGAAC--TTGGCCCG    288
                     |||||.||||||||.|||||||..||.||.|.|||  |||  |.||.||.
BPUM_1325___m    241 ATTGATCATATTGGGGCAGGAGTGGTCTCAGCAAA--AACCATCGGTCCC    288

BSNT_02385___    289 TTTCAGGCCGTACGGATTATGACTGGCGCGCAAATCCCTGAA-GGGGCAG    337
                     ||.||.|||.|.||.||.|||||.||.||..||||||| ||| ||.|||.
BPUM_1325___m    289 TTCCAAGCCATCCGTATCATGACAGGAGCAAAAATCCC-GAATGGAGCAA    337

BSNT_02385___    338 ATGCAGTCGTCATGATTGAACTGACTCAAACCTTTGAGGAGAATGGGAAG    387
                     |||..|||.|||||.||||.||||||.||||||||||..|..||||.||.
BPUM_1325___m    338 ATGTCGTCATCATGCTTGAGCTGACTAAAACCTTTGAAAAAGATGGAAAA    387

BSNT_02385___    388 TCATTTATGTC-TTTAAAACGCCGCTTTCAGACGGGGGATAATATT----    432
                     ||||.|||||| .||||||..|||| |..|.|..|||||.||||||    
BPUM_1325___m    388 TCATATATGTCACTTAAAAGACCGC-TGAAAAAAGGGGACAATATTTCTC    436

BSNT_02385___    433 -TCAAAAACAGGTGAGGACGCTCAAAAAGGGAGTGTTTTACTGAGAAAGG    481
                      |||     |||.||.||.|..|...||||||.|||..|.||.|.|||.|
BPUM_1325___m    437 GTCA-----AGGAGAAGAGGTACTTGAAGGGAATGTGATGCTCAAAAAAG    481

BSNT_02385___    482 GTACCCGGGTGACACCAGGAGTGACGGCTCTTTTGGCAACATTCGGATAC    531
                     |.|||...||.||.||.||.|||||.||.||.|||||.|||||.|||||.
BPUM_1325___m    482 GAACCAAAGTTACTCCGGGCGTGACAGCCCTATTGGCGACATTTGGATAT    531

BSNT_02385___    532 TCA-TCTGTGCCTGTCGTGAGAAAGCCTGTAGTCGGGATTATCGCAACCG    580
                     .|| || ||.||.||.||.|.||||||.||..|.||.||.|||.||||.|
BPUM_1325___m    532 GCAGTC-GTCCCAGTGGTCAAAAAGCCAGTGATTGGCATCATCTCAACAG    580

BSNT_02385___    581 GTACCGAATTGCTGAATGTCAGTGATCC---GCTGGAACCGGGAAAAATC    627
                     ||||.|||.|.||..|.||.||||||.|   |.||||  |||| ||.||.
BPUM_1325___m    581 GTACAGAACTTCTTCAAGTGAGTGATGCGATGGTGGA--CGGG-AAGATT    627

BSNT_02385___    628 CGCAACAGCAATGCGAGTATGGTATATGCGCAAGCGA---TAGAAGCAGG    674
                     .|.|||||.||....||||||||.|||||.||   ||   |.|||||.||
BPUM_1325___m    628 AGAAACAGTAACCTTAGTATGGTTTATGCCCA---GATCCTCGAAGCTGG    674

BSNT_02385___    675 CGCAACACCGCTTTATTTAGG----GAAAATCTCTGATGAACTGGATAAA    720
                     .|.....||||||.|||||||    |    |.||||||||..|.||.|||
BPUM_1325___m    675 GGGGGAGCCGCTTGATTTAGGTGGTG----TGTCTGATGATTTTGACAAA    720

BSNT_02385___    721 AGCTTTGCTGCAGTTAAAGAAGCGATGAAAAAGGTGGACTTCCTGATCAC    770
                     ||||.|...|||||.||||.|||..|..|.|||||.||||||.|.|||||
BPUM_1325___m    721 AGCTATCAAGCAGTCAAAGCAGCCTTAGAGAAGGTAGACTTCTTAATCAC    770

BSNT_02385___    771 AACTGGCGGTGTGTCAGTCGGTGACTTTGACTTTTTGCCTGCGATCTATG    820
                     |||.|||||.||.|||||.|||||.|||||||||.|.||.||.||.||||
BPUM_1325___m    771 AACAGGCGGAGTTTCAGTAGGTGATTTTGACTTTCTCCCCGCAATTTATG    820

BSNT_02385___    821 AAAAACTCGGAGCGGACGTGCTGTTTAATAAAGTTGCCATGCGCCCGGGC    870
                     |||||||.|||||.||.|||||.|||||||||||.||||||.|.||.||.
BPUM_1325___m    821 AAAAACTGGGAGCTGAAGTGCTATTTAATAAAGTGGCCATGAGACCCGGA    870

BSNT_02385___    871 AGCGTGACAACGGTGGC-GC-ATGCAAACGATATG-----CTGCTGTTTG    913
                     ||.|||||.|||||.|| || ||||.||    |||     ||||||||||
BPUM_1325___m    871 AGTGTGACGACGGTTGCTGCAATGCCAA----ATGGTCAACTGCTGTTTG    916

BSNT_02385___    914 GCCTTTCAGGTAATCCGTCGGCATGCTATGTCGGTTTTGAACTGTTTGTC    963
                     ||||.|||||.|||||..|.||.||.|.|||.||.||||||.|.|||||.
BPUM_1325___m    917 GCCTGTCAGGAAATCCAGCTGCCTGTTTTGTTGGCTTTGAATTATTTGTG    966

BSNT_02385___    964 AAACCGATAATCCAGACATGG-CTGCTCAATGAAACA-CCGCATTC----   1007
                     ||||||||.|||.|.|.|||| ||  |..|.|||||| |||  |||    
BPUM_1325___m    967 AAACCGATGATCTATAAATGGTCT--TTGAAGAAACAGCCG--TTCCCTG   1012

BSNT_02385___   1008 AATTTG-TGCG--GAAGCTGTTTTGACCAAGGATTTTCC-GAAGCCGAAC   1053
                     |.|||| ||.|  |||||     ||||..|.|||||||| .||||| |||
BPUM_1325___m   1013 ATTTTGCTGAGGCGAAGC-----TGACACACGATTTTCCAAAAGCC-AAC   1056

BSNT_02385___   1054 CCATTTACCCGATTTGTTCGTGCGCTCGTGCAC--CA--TCAGGAAGGGA   1099
                     ||.||.||.||||||||..|.||     .||||  ||  |||.|  ||.|
BPUM_1325___m   1057 CCGTTCACTCGATTTGTCAGAGC-----AGCACTTCAATTCACG--GGCA   1099

BSNT_02385___   1100 ---AGCT--GTTGGCGACACCC-----GTTGGCTTAGATAAGTCGAGCTC   1139
                        ||||  ||  |.||| |||     ||   ||| |||||.||.||..|
BPUM_1325___m   1100 GTCAGCTCAGT--GTGAC-CCCAACAGGT---CTT-GATAAATCAAGTGC   1142

BSNT_02385___   1140 TGTCACATCACTTGCAGATGCCAA-TGCATTTATTATCCTGCCGGGCGGC   1188
                     .|||||.|||.|||||||.||.|| ||| ||.||..|.|||||.||.||.
BPUM_1325___m   1143 CGTCACCTCAATTGCAGAGGCTAACTGC-TTCATCGTGCTGCCAGGTGGA   1191

BSNT_02385___   1189 ACGCGAGGCTACGAATCTGGCAGAAC-GGTTCAAGTACTGC----TCATC   1233
                     ||..||||.|...|..|.|| .||.| |||.||.||.||||    |||.|
BPUM_1325___m   1192 ACAAGAGGTTTTAAGGCCGG-TGATCAGGTGCATGTTCTGCTGTTTCAGC   1240

BSNT_02385___   1234 AGAGAAGAGAATGGAAGTGAATGGCCTTGGTCCGTCCTTTCCCGATCGTC   1283
                     | .||||         ||||..|               |||||.||    
BPUM_1325___m   1241 A-CGAAG---------GTGAGGG---------------TTCCCTAT----   1261

BSNT_02385___   1284 CAAGTTGTAG----------   1293
                        |.||.|.          
BPUM_1325___m   1262 ---GCTGGATGACACATTAA   1278


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