Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02387 and BPUM_1326

See Amino acid alignment / Visit BSNT_02387 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:52
# Commandline: needle
#    -asequence dna-align/BSNT_02387___mobB.1.24716.seq
#    -bsequence dna-align/BPUM_1326___mobB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02387___mobB-BPUM_1326___mobB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02387___mobB-BPUM_1326___mobB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02387___mobB
# 2: BPUM_1326___mobB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 610
# Identity:     317/610 (52.0%)
# Similarity:   317/610 (52.0%)
# Gaps:         173/610 (28.4%)
# Score: 619.5
# 
#
#=======================================

BSNT_02387___      1 ATGGCCTTGGTCCGTC-CTTTCCCGATCGTCCAAGTTGTAGGATTTCAAA     49
                     |||  ||.|.|  |.| |.||....||..|.||.||.||.||.|.|||||
BPUM_1326___m      1 ATG--CTGGAT--GACACATTAAGCATATTACAGGTGGTCGGTTATCAAA     46

BSNT_02387___     50 ACAGCGGGAAAACAACGTTTATTGAGCGCATTCTTGAAAAAGCCTCTGAA     99
                     |||||||.||.||..||||.||||             ||||| .|||| .
BPUM_1326___m     47 ACAGCGGAAAGACGTCGTTAATTG-------------AAAAG-ATCTG-T     81

BSNT_02387___    100 CAGGGAG-TCCATTTG--------------GGCTGCCTGAAGCATCATGG    134
                     |||..|| |..|.|||              ||||||.|.||.||.|||||
BPUM_1326___m     82 CAGCTAGCTGTACTTGATGGGCTGAAGCTAGGCTGCTTTAAACACCATGG    131

BSNT_02387___    135 TCACGGCGGTGAACCGCA-AACG-CTCACGGAAGGAAAAGACACGGACCG    182
                     .||.||||||.|||  || |.|| ||...|.|||.|||||||||.||.||
BPUM_1326___m    132 ACATGGCGGTAAAC--CAGATCGTCTTTTGAAAGAAAAAGACACCGATCG    179

BSNT_02387___    183 TTA---CAAGGCG---GCAGGTGCTGATGTAACAGCAGTAGAAGGTGCTG    226
                     .||   |..||||   |||..|||.|.||     || ||.|||||.|..|
BPUM_1326___m    180 ATATGTCGGGGCGGGTGCATTTGCCGCTG-----GC-GTGGAAGGGGAGG    223

BSNT_02387___    227 GTGTGTTACAGCTGACTGCCCGCCGCAATTGGGATTTGGCACGGCTGATT    276
                     |||..||     |.|||           ||..|||...||||     ||.
BPUM_1326___m    224 GTGAATT-----TCACT-----------TTTCGATGCAGCAC-----ATC    252

BSNT_02387___    277 GAGTTATACCAATTTCTCGAAACAGACTG--------TCTTC--------    310
                     ..||||.|.|||||.||     |||..||        |||||        
BPUM_1326___m    253 ACGTTAAAGCAATTGCT-----CAGCATGTGTCAGCATCTTCCATTAGAC    297

BSNT_02387___    311 -------TGATTGAAGGCTTTAAAAAAGCCTCTTATCCTAAAGTGGTTAT    353
                            ||||.|||||.|.||||.|.||..|.||.|..|||.|..||  
BPUM_1326___m    298 GCAGTCTTGATAGAAGGGTATAAACAGGCACCATACCGCAAAATCATT--    345

BSNT_02387___    354 CCTAAGTGAA-AAGGAAGATCTGGAAGCGCTGCAAGCAGTAAATA-TAAT    401
                       |..||||| ||.|||||   |||   |||            || |.||
BPUM_1326___m    346 --TGTGTGAAGAATGAAGA---GGA---GCT------------TATTGAT    375

BSNT_02387___    402 C-GCCATCA---TC---TATAGAAAAA----------------AAGAGCA    428
                     | ..||.||   ||   |||||||..|                |||||  
BPUM_1326___m    376 CTTTCAACACTTTCCAATATAGAAGCAGCTATTTATTTTTCTCAAGAG--    423

BSNT_02387___    429 TATGACAG--AGCATCAGGGATTA-------CCCGT-TTTTCATGCGGAT    468
                       |..|||  |||  ||...||||       ||.|| |||||| ||...|
BPUM_1326___m    424 --TTTCAGTTAGC--CAAAAATTATTCTTTTCCAGTGTTTTCA-GCCTTT    468

BSNT_02387___    469 GATCCGGTTGCCGTGGACTTTGTGCTTTCAC--AGCTGAAGGG----GGA    512
                     ||...||.|| ||...||.||.||.|.|.||  | .|||||||    || 
BPUM_1326___m    469 GAAAAGGATG-CGAATACATTTTGTTATAACTTA-TTGAAGGGAGGCGG-    515

BSNT_02387___    513 ATCTGCATAA    522
                     .|||...|.|
BPUM_1326___m    516 CTCTTTTTGA    525


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