Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02401 and BPUM_1335

See Amino acid alignment / Visit BSNT_02401 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:52
# Commandline: needle
#    -asequence dna-align/BSNT_02401___fruK.1.24716.seq
#    -bsequence dna-align/BPUM_1335___fruK.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02401___fruK-BPUM_1335___fruK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02401___fruK-BPUM_1335___fruK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02401___fruK
# 2: BPUM_1335___fruK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 928
# Identity:     649/928 (69.9%)
# Similarity:   649/928 (69.9%)
# Gaps:          32/928 ( 3.4%)
# Score: 2117.5
# 
#
#=======================================

BSNT_02401___      1 ATGATTTACACTGTAACACTTAATCCATCTGTCGATTATATTGTTCACGT     50
                     ||||||||.||.||.||..|.||.|||||.||.|||||.||.||.|||||
BPUM_1335___f      1 ATGATTTATACAGTTACTTTAAACCCATCAGTTGATTACATCGTACACGT     50

BSNT_02401___     51 TGAAGATTTTACTGTAGGAGGCCTGAACCGTTCTTCGTATGATACCAAGT    100
                     .||.||||||.|.||.||.||..||||.|||||..|.|||||.|..||.|
BPUM_1335___f     51 GGAGGATTTTGCAGTCGGCGGTTTGAATCGTTCAACTTATGACAAAAAAT    100

BSNT_02401___    101 ATCCAGGGGGCAAAGGCATCAACGTATCGAGACTGCTGAAAAGACACCAT    150
                     |||||||.||.|||||.|||||.||.||.||.||..|.|||.|.|||..|
BPUM_1335___f    101 ATCCAGGCGGAAAAGGGATCAATGTCTCAAGGCTTTTAAAACGTCACAGT    150

BSNT_02401___    151 GTGGCGTCTAAAGCGCTCGGATTCGTCGGCGGATTTACCGGAGAATATA-    199
                     ||.|..||.||.|||||.||||||.|.||.||||||||.||..|||||| 
BPUM_1335___f    151 GTTGAATCAAAGGCGCTTGGATTCATAGGTGGATTTACAGGCAAATATAT    200

BSNT_02401___    200 TCAAAACATTTTTACGGGAAGAAAACCTGGAAACAGCTTTTTCTGAAGTA    249
                     ||||.|| |||||.|...|.|||.|..|..|||||||.|||...||.||.
BPUM_1335___f    201 TCAAGAC-TTTTTGCAAAACGAACAATTACAAACAGCCTTTCACGAGGTG    249

BSNT_02401___    250 AAAGGGGATACCCGTATCAATGTAAAGCTGAAAACTGGTGATGAAACTGA    299
                     ..||..|||||.||.||.|||||.||.||.|||||.|||||.|||||.||
BPUM_1335___f    250 TCAGAAGATACACGAATTAATGTGAAACTAAAAACCGGTGAAGAAACCGA    299

BSNT_02401___    300 AATTAACGGGCAGGGACCGACAATTTCGGATGAAG----ATTTCAAAGCC    345
                     |||.|||||.|..||.||..|||||.|   |||||    ||||.|     
BPUM_1335___f    300 AATCAACGGACTAGGTCCATCAATTAC---TGAAGCGCAATTTGA-----    341

BSNT_02401___    346 TT--TTTAGAACAGTTCCAA------TCTTTGCAAGAGGGAGATATCGTC    387
                     ||  |||    |.||..|||      ||.|||...||.||.|||.||||.
BPUM_1335___f    342 TTCGTTT----CTGTCTCAATTTACTTCATTGATTGAAGGTGATGTCGTT    387

BSNT_02401___    388 GTTCTTGCAGGAAGCATTCCATCTTCACTCCCTCACGATACTTATGAAAA    437
                     ||..|.||.||.||||||||.||||||.|.||.||..|.||.||||||..
BPUM_1335___f    388 GTGTTAGCTGGTAGCATTCCTTCTTCATTGCCGCATAACACGTATGAACG    437

BSNT_02401___    438 AATCGCAGAGGCCTGCAAACAGCAGAACGCACGAGTTGTTCTGGATATCT    487
                     .||.||.||||..|||.||.||||...||...||||.||.||.|||||.|
BPUM_1335___f    438 TATTGCTGAGGTATGCGAAAAGCAAGGCGTTAGAGTGGTCCTTGATATTT    487

BSNT_02401___    488 CAGGCGAGGCTCTTTTGAAAGCAACAGAAATGAAACCATTTTTGATGAAG    537
                     |.||.||.||.||...|||||||.|||...|||||||.||.||.||||||
BPUM_1335___f    488 CTGGAGAAGCCCTAAAGAAAGCAGCAGGCTTGAAACCGTTCTTAATGAAG    537

BSNT_02401___    538 CCAAATCATCATGAGCTTGGAGAAATGTTCGGCACGGCCATTACATCTGT    587
                     |||||.||||||||.||.||.||||||||.|..||...|||..|..|||.
BPUM_1335___f    538 CCAAACCATCATGAACTAGGTGAAATGTTTGAAACAAGCATCTCTACTGC    587

BSNT_02401___    588 TGAGGAAGCCGTTCCTTATGGGAAAAAGCTTGTAGAACAAGGCGCTGAAC    637
                     .||.||||||.|||||||||||||.|||||..||||||||||.|||||||
BPUM_1335___f    588 GGAAGAAGCCATTCCTTATGGGAAGAAGCTGTTAGAACAAGGTGCTGAAC    637

BSNT_02401___    638 ATGTAATTGTATCAATGGCCGGAGACGGAGCGCTTCTGTTTACGAACGAA    687
                     ||||.||.|||||.|||||.|||||.||.||.||..|.||.|..||.|||
BPUM_1335___f    638 ATGTCATCGTATCCATGGCTGGAGATGGTGCTCTCTTATTCAGTAAGGAA    687

BSNT_02401___    688 GCTGTTTATTTTGCTAACGTGCCAAAGGGGAAATTGGTAAACTCAGTCGG    737
                     |...|||||....|.|||||.||||||||.|...|.||.||.||.||.||
BPUM_1335___f    688 GGGATTTATCAGTCCAACGTTCCAAAGGGTACGCTTGTTAATTCGGTTGG    737

BSNT_02401___    738 AGCAGGGGATTCCGTTGTTGCAGGTTTCCTTGCCGGAATTTCCAAACAGC    787
                     .|||||||||||.||.||||||||.||..|.|||||..||||.|||...|
BPUM_1335___f    738 TGCAGGGGATTCAGTCGTTGCAGGATTTTTAGCCGGCGTTTCGAAAGGTC    787

BSNT_02401___    788 TGCCGCTTGAAGAAGCA-TTCCGCTTAGGAGTTACTTCAGGCAGTGCTAC    836
                     |..||.||||||||.|| ||..|||| ||.||.||.||||||||||||||
BPUM_1335___f    788 TTTCGATTGAAGAATCATTTAAGCTT-GGCGTCACATCAGGCAGTGCTAC    836

BSNT_02401___    837 CGCGTTCTCTGAAGAACTTGGAACAGAAGAATTTGTC--CAGCAGCTTCT    884
                     .||.||.|||||.||.|||||.||..||||..|||||  || || ||..|
BPUM_1335___f    837 AGCATTTTCTGAGGAGCTTGGGACCAAAGAGCTTGTCGACA-CA-CTATT    884

BSNT_02401___    885 TCCTGAAGTTAAGGTCACACGTCTATAG    912
                     .||..||||.||.||||||||..|.||.
BPUM_1335___f    885 ACCACAAGTAAAAGTCACACGCATTTAA    912


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02401 and BPUM_1335

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
