Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02406 and BPUM_1339

See Amino acid alignment / Visit BSNT_02406 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:53
# Commandline: needle
#    -asequence dna-align/BSNT_02406.1.24716.seq
#    -bsequence dna-align/BPUM_1339___ykpA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02406-BPUM_1339___ykpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02406-BPUM_1339___ykpA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02406
# 2: BPUM_1339___ykpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1623
# Identity:    1108/1623 (68.3%)
# Similarity:  1108/1623 (68.3%)
# Gaps:         243/1623 (15.0%)
# Score: 4370.0
# 
#
#=======================================

BSNT_02406         1 ATGATTGCTGTAAATAATGTAAGCTTGCGGTTTGCGGATCGCAAGTTATT     50
                     ||||||||.|||||||||||.||.|||||.|||||.|||||.||..||||
BPUM_1339___y      1 ATGATTGCAGTAAATAATGTTAGTTTGCGATTTGCTGATCGTAAACTATT     50

BSNT_02406        51 TGAAGATGTTAATATTAAATTTACCCCAGGCAACTGCTATGGGTTAATTG    100
                     ||||||.||.|||||||||||.||.||.|||||||||||.||.|||||||
BPUM_1339___y     51 TGAAGAAGTAAATATTAAATTCACTCCTGGCAACTGCTACGGTTTAATTG    100

BSNT_02406       101 GTGCAAACGGTGCCGGTAAATCAACGTTTCTAAAGGTGCTGTCAGGCGAA    150
                     ||||.||.||.||.|||||||||||||||||||||.|.||.|||||.|||
BPUM_1339___y    101 GTGCCAATGGAGCTGGTAAATCAACGTTTCTAAAGATTCTTTCAGGTGAA    150

BSNT_02406       151 ATCGAGCCTCAGACAGGCGACGTGCATATGAGTCCTGGCGAGCGTCTTGC    200
                     ||||||.|||||||||||||.||.||||||||.|||||.||||||.|.||
BPUM_1339___y    151 ATCGAGGCTCAGACAGGCGATGTTCATATGAGCCCTGGTGAGCGTTTAGC    200

BSNT_02406       201 CGTCTTGAAGCAGAACCATTTTGAGTACGAAGAGTATGAAGTGCTGAAAG    250
                     ..|.||.||.||||||||.|||||.||||||||.|.||||||..|.||||
BPUM_1339___y    201 GATTTTAAAACAGAACCACTTTGAATACGAAGAATTTGAAGTATTAAAAG    250

BSNT_02406       251 TGGTCATTATGGGCCACAAACGCCTGTATGAAGTCATGCAGGAGAAAGAC    300
                     |||||||.|||||.||||||||.||.|||||.||.||||||||||||||.
BPUM_1339___y    251 TGGTCATGATGGGTCACAAACGTCTATATGATGTGATGCAGGAGAAAGAT    300

BSNT_02406       301 GCTATTTACATGAAGCCTGATTTCTCAGATGAGGATGGGATTCGTGCTGC    350
                     ||.|||||.|||||.|||||||||||||||||.||.||.||||||||.||
BPUM_1339___y    301 GCGATTTATATGAAACCTGATTTCTCAGATGAAGACGGAATTCGTGCAGC    350

BSNT_02406       351 TGAGCTAGAAGGTGAATTCGCGGAACTGAACGGTTGGGAAGCGGAAAGTG    400
                     .|||||.||||||||.|||||.||..|.|||||.||||||||.|||||||
BPUM_1339___y    351 AGAGCTTGAAGGTGAGTTCGCTGAGTTAAACGGCTGGGAAGCAGAAAGTG    400

BSNT_02406       401 AAGCTGCGATCCTGTTAAAAGGCCTTGGTATCTCAGAAGA-TCTGCACAC    449
                     ||||.||.|||.|.||||||||.|||||.||..||| ||| .||.||..|
BPUM_1339___y    401 AAGCAGCAATCTTATTAAAAGGTCTTGGCATACCAG-AGAGCCTTCAATC    449

BSNT_02406       450 AAAAAAGATGGCAGACCTCGGCGGTTCGGAGAAGGTAAAAGTTCTCTTGG    499
                     .||.||.|||.|.||.||.||||||||.||.|||||.|||||..|..|.|
BPUM_1339___y    450 GAAGAAAATGTCTGAGCTTGGCGGTTCTGAAAAGGTCAAAGTATTACTAG    499

BSNT_02406       500 CACAGGCATTATTCGGCAAGCCGGATGTTCTGCTGCTCGATGAGCCGACG    549
                     |.||.||.|||||.||||||||.||.|||||.||.||.||||||||.|||
BPUM_1339___y    500 CTCAAGCTTTATTTGGCAAGCCTGACGTTCTTCTTCTGGATGAGCCAACG    549

BSNT_02406       550 AACCACTTGGACCTTCAGGCAATCCAGTGGCTTGAAGAGTTTCTGATTAA    599
                     ||||||||||||.|.||.||.|||||||||||.||||||||.||.|||||
BPUM_1339___y    550 AACCACTTGGACTTACAAGCCATCCAGTGGCTGGAAGAGTTCCTCATTAA    599

BSNT_02406       600 CTTTGAAAACACAGTTATTGTCGTATCCCATGACCGTCACTTCTTAAATA    649
                     .||||||||.||.||.||.|||||.||.||||||||||||||||||||.|
BPUM_1339___y    600 TTTTGAAAATACCGTGATCGTCGTTTCGCATGACCGTCACTTCTTAAACA    649

BSNT_02406       650 AAGTATGTACGCACATTGCCGACCTTGATTTTAACAAAATTCAAATCTAT    699
                     ||||||||||.||.|||||.|||||.||.||....|||||||||.|.|||
BPUM_1339___y    650 AAGTATGTACACATATTGCGGACCTAGACTTCGGAAAAATTCAAGTATAT    699

BSNT_02406       700 GTAGGAAACTATGATTTCTGGTACGAGTCAAGCCAGCTGGCGTTAAAGCT    749
                     ||.||.|||||||||||||||||.|||||.||||||||.|||.|.||.||
BPUM_1339___y    700 GTCGGTAACTATGATTTCTGGTATGAGTCCAGCCAGCTAGCGCTGAAACT    749

BSNT_02406       750 TTCTCAAGAAGCGAACAAGAAAAAAGAAGAGCAGATTAAACAGCTTCAAG    799
                     |..||||||.||.||.|||||||||||||||||.|||||.||||||||||
BPUM_1339___y    750 TAGTCAAGATGCAAATAAGAAAAAAGAAGAGCAAATTAAGCAGCTTCAAG    799

BSNT_02406       800 AGTTTGTCGCTAGATTCAGCGCCAATGCGTCTAAATCTAAGCAGGCTACA    849
                     ||||.||.|||.|.|||||.||.||.||.||||||||.|||||.||.||.
BPUM_1339___y    800 AGTTCGTTGCTCGGTTCAGTGCGAACGCTTCTAAATCGAAGCAAGCGACC    849

BSNT_02406       850 TCAAGAAAGAAACTTCTCGAAAAAATCACGCTGGATGATATTAAACCGTC    899
                     ||||||||||||.|.||.||.||||||.|..|.||.||||||||.||.||
BPUM_1339___y    850 TCAAGAAAGAAATTGCTTGATAAAATCTCTTTAGACGATATTAAGCCATC    899

BSNT_02406       900 TTCCCGCCGCTATCCTTATGTTAACTTCACGCCGGAACGGGAAATCGGAA    949
                     |||.||....|||||.||||||.|.||..||||.||.||.||||||||||
BPUM_1339___y    900 TTCACGTAAATATCCGTATGTTCATTTTGCGCCAGAGCGCGAAATCGGAA    949

BSNT_02406       950 ATGATGTTCTTCGCGTGGAAGGCTTAACAAAAACAATCGATGGCGTAAAG    999
                     |||||||.||||..||.|||||..||.|.||||||||.||.||.|||||.
BPUM_1339___y    950 ATGATGTCCTTCAAGTAGAAGGTCTATCGAAAACAATTGACGGTGTAAAA    999

BSNT_02406      1000 GTGCTTGACAATGTCAGCTTTATTATGAATCGAGAAGATAAAATTGCTTT   1049
                     ||.|||||.||.|||||.|||||.||||||||.||.|||||||||||.||
BPUM_1339___y   1000 GTACTTGATAACGTCAGTTTTATCATGAATCGCGAGGATAAAATTGCGTT   1049

BSNT_02406      1050 CACT-GGCCGAAATGAACTTGCTGTTACTACGCTGTTTAAAATCATTTCC   1098
                     | || .||||.|||||.||.||.||..||||..|.||||||||..||.|.
BPUM_1339___y   1050 C-CTAAGCCGTAATGAGCTGGCAGTGTCTACTTTATTTAAAATTCTTGCT   1098

BSNT_02406      1099 GGGGAAATGGAAGCTGACAGCGGAACGTTTAAATGGGGTGTTACCACATC   1148
                     ||.||.||||||.|.||||.|||.||.|.|||||||||.||.||.|||||
BPUM_1339___y   1099 GGTGAGATGGAACCAGACAACGGGACATATAAATGGGGCGTCACAACATC   1148

BSNT_02406      1149 TCAAGCGTATTTTCCAAAAGACAACAGCGAATATTTCGAAGGCAGTGATC   1198
                     ||||||.|.|||.||.||||||||.||.|||||.||.|||||.|..|||.
BPUM_1339___y   1149 TCAAGCCTTTTTCCCGAAAGACAATAGTGAATACTTTGAAGGAAACGATG   1198

BSNT_02406      1199 TGAACCTTGTAGACTGGCTTCGCCAATATTCTCCGCACGACCAAAGTGAG   1248
                     |..|.||.||.||.|||||||||||.||||||||..|.||.|||||.|||
BPUM_1339___y   1199 TTGATCTAGTGGATTGGCTTCGCCAGTATTCTCCTAATGATCAAAGCGAG   1248

BSNT_02406      1249 AGCTTTTTACGCGGTTTCTTA-GACGCATGCTGTTCTCTGGAGAAGAAGT   1297
                     |||||.||||||||.|||||| ||||.|||||.|||||||||||||||||
BPUM_1339___y   1249 AGCTTCTTACGCGGATTCTTAGGACGTATGCTTTTCTCTGGAGAAGAAGT   1298

BSNT_02406      1298 CCACAAAAAAGCAAATGTACTT-TCCGGGGGAGAAAAGGTCCGCTGTATG   1346
                     ..|.||||||||||..|| ||| ||.||.|||||||||||.||.||||||
BPUM_1339___y   1299 AAAGAAAAAAGCAAGCGT-CTTATCAGGAGGAGAAAAGGTTCGTTGTATG   1347

BSNT_02406      1347 CTGTCGAAAGCGATGCTTTCTGGCGCCAATAT-----TTTAA--------   1383
                     .|.||||||..||||||.||.||.||.|||.|     ||..|        
BPUM_1339___y   1348 TTATCGAAAATGATGCTGTCAGGAGCGAATGTACTGCTTCTAGATGAGCC   1397

BSNT_02406      1383 --------------------------------------------------   1383
                                                                       
BPUM_1339___y   1398 GACGAACCACTTAGACCTAGAATCCATTACGGCGCTGAATAACGGTTTAA   1447

BSNT_02406      1383 --------------------------------------------------   1383
                                                                       
BPUM_1339___y   1448 TGAGCTTTAAAGGAGCGATGCTCTTCTCATCTCATGACCACCAGTTTGTT   1497

BSNT_02406      1383 --------------------------------------------------   1383
                                                                       
BPUM_1339___y   1498 GAAACAGTGGCAAACCGTATTATCGAAGTGACGCCAAATGGCATCGTCGA   1547

BSNT_02406      1383 --------------------------------------------------   1383
                                                                       
BPUM_1339___y   1548 TAAACAAACAACATATGATGAGTTCTTATCAGATCAAGAGATTCAAAAGA   1597

BSNT_02406      1383 -----------------------   1383
                                            
BPUM_1339___y   1598 GACTCGTTGAGCTTTATGCGTAA   1620


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