Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02409 and BPUM_1341
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:53
# Commandline: needle
# -asequence dna-align/BSNT_02409___ampS.1.24716.seq
# -bsequence dna-align/BPUM_1341___ampS.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02409___ampS-BPUM_1341___ampS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02409___ampS-BPUM_1341___ampS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02409___ampS
# 2: BPUM_1341___ampS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1297
# Identity: 873/1297 (67.3%)
# Similarity: 873/1297 (67.3%)
# Gaps: 128/1297 ( 9.9%)
# Score: 2775.0
#
#
#=======================================
BSNT_02409___ 1 ATGGATTCATTTTCACAGAAATTAAATACATATGC-----ACAGCTGGCG 45
|||..|||||||..|.|..||.||.||..|||||| .||.|
BPUM_1341___a 1 ATGAGTTCATTTGAAAAACAACTAGATCAATATGCGAAGACCATC----- 45
BSNT_02409___ 46 GTAGAAGTCGGCGTTAATGTCCAAAAAGGCCAGTATGTAGTCGTAAATGC 95
||.||||||||.||.|||||.|||||||..||..|.||.||||||...||
BPUM_1341___a 46 GTTGAAGTCGGTGTGAATGTTCAAAAAGAACAAGAAGTCGTCGTATCCGC 95
BSNT_02409___ 96 TTCAA---------CAGAC---GTTCGGGATTTTGTC-CGTTTAATTGTA 132
.|||| ||||| ||||| |.||||| ||
BPUM_1341___a 96 ATCAACTGAATCTGCAGACCTTGTTCG---TCTTGTCGCG---------- 132
BSNT_02409___ 133 AAACACGCATATGAAAAGGGCGCAAAAAACGT-CACCGTGAATTGGCAGG 181
|||||.||.|||||....||.||.|||||||| || .||..||.||
BPUM_1341___a 133 AAACATGCGTATGAGCGCGGGGCGAAAAACGTACA-----TATCCGCTGG 177
BSNT_02409___ 182 A-TGACGAAG-------TCGCCAAATTAAAATACGAACTTGCGCCGTTTG 223
| |||||..| ||| .||||||||.||||.|||.|||...|
BPUM_1341___a 178 AGTGACGGTGTTCTTGCTCG----TTTAAAATATGAACATGCACCGCAGG 223
BSNT_02409___ 224 AAGCATTTGAAGAATATCCTGAATGGGAAGCAAAAGGCAGA-----GAAG 268
|.|..|||||..|||..||||||||||||||| |||| |||
BPUM_1341___a 224 ATGTGTTTGAGCAATTCCCTGAATGGGAAGCA-----CAGATGATGGAA- 267
BSNT_02409___ 269 AGC-TTGCCAAAAATGGAGCTGCTTTCAT----TTCTGTTGTGTCGTCAA 313
|.| ||||.|||...||.|..|||||.|| .||| ||||...||
BPUM_1341___a 268 ACCATTGCAAAACGCGGCGGCGCTTTTATCACGATCT----TGTCAGAAA 313
BSNT_02409___ 314 ACCCAGACTTGCTAAAAGGTATAGATTCCAAACGGATTGCGGCATTCCAA 363
.|||.|||.|.||...|||.||.|||||.|||...||.||.|||...|||
BPUM_1341___a 314 GCCCTGACCTTCTGCGAGGCATTGATTCGAAAAAAATCGCTGCACAGCAA 363
BSNT_02409___ 364 AAAGCAGCAGGCAAAGCATTACATACATACAGACAATATATTCAATCAGA 413
|||||.||.||....||..|.||||||||..|.|||||..||||||||||
BPUM_1341___a 364 AAAGCCGCTGGATCCGCCCTTCATACATATCGCCAATACGTTCAATCAGA 413
BSNT_02409___ 414 CAAAGTCAGC-TGGACTGTCGTAGGTGCGGCATCAGCAGGCTGGGCTCAC 462
|||||| .|| |||||.|||||.||.||.||||||..||..|||||..|.
BPUM_1341___a 414 CAAAGT-GGCTTGGACGGTCGTCGGCGCTGCATCAAAAGATTGGGCGAAA 462
BSNT_02409___ 463 AAGGTGTTTCCTGGCAAATCAGAGGAGGAAGCGATCCACCTT--CTGTGG 510
|||.|.||.||||.|.|..||||.||.|||||.|| ..||| .|.|||
BPUM_1341___a 463 AAGATTTTCCCTGACCAGACAGACGAAGAAGCTAT--TGCTTTATTATGG 510
BSNT_02409___ 511 GAAGAAATTTTTAAAGCGACGCGCGTAAATGAAGACA-ACCCGGTTCAGG 559
||..||||.|||||||...|.||||...||.||| || |.||.||..|||
BPUM_1341___a 511 GATCAAATCTTTAAAGTTGCTCGCGCTGATCAAG-CAGATCCTGTGGAGG 559
BSNT_02409___ 560 CGTGGATCAATCATGACCAAAATCTTCATGAAAAAGTTGA---CCATTTG 606
|.||||..||.||.||..||...||..|||||||.|||.| || |.
BPUM_1341___a 560 CTTGGAAAAAGCACGATGAATCGCTAAATGAAAAGGTTAAAATCC---TA 606
BSNT_02409___ 607 AACGAGAGACATTAC-----GCTGCCTTACATTATCAAGCTGAAGGAACT 651
||.|||.|.||.||| || |.||||||.|.|||...||||||
BPUM_1341___a 607 AATGAGCGCCACTACCACAAGC-----TTCATTATGATGCTCCTGGAACT 651
BSNT_02409___ 652 GATTTAACAATTAAGCTGCCTAGGA--AGCATGTTTGGGCAGGTGCGGGA 699
||||||||.|||.||||.||| || ||||..||||||.||||||.||.
BPUM_1341___a 652 GATTTAACGATTGAGCTCCCT--GAACAGCACATTTGGGTAGGTGCCGGC 699
BSNT_02409___ 700 AGCGTGAATGAAAGCGGCCATGAG-----TTTATGGCCAATATGCCGACA 744
|||||||.|||..||||| | ||.||||||||.|||||.|||
BPUM_1341___a 700 AGCGTGAGTGAGCGCGGC-----GTCTCTTTCATGGCCAACATGCCAACA 744
BSNT_02409___ 745 GAAGAAGTGTTCACGCTGCCGCAAAAAGACGGGGTTGACGGTGTGGTATC 794
|||||||||||.||..|.||..|||||||.||.||..|.||....||.||
BPUM_1341___a 745 GAAGAAGTGTTTACCGTACCTAAAAAAGATGGTGTAAATGGGACTGTCTC 794
BSNT_02409___ 795 AAGCACAAAACCATTAAGCTACGGCGGAAATATTATTGAAAATTTCACCC 844
||||||||||||..|.|||||.|..||||||||.|||||..|.||.||..
BPUM_1341___a 795 AAGCACAAAACCGCTCAGCTATGCAGGAAATATCATTGATGAGTTTACTT 844
BSNT_02409___ 845 TGACGTTTGAAAATGGCCGTATAGTCGACATTAAAGCTGAA-AAAGGTGA 893
|.||.||||||||||||||.||.|||||..|.||||| ||| .||||.||
BPUM_1341___a 845 TAACATTTGAAAATGGCCGAATTGTCGATGTGAAAGC-GAAGGAAGGCGA 893
BSNT_02409___ 894 GGATATTTTAAAAGAACTGGTGGAAACAGATGAAGGTTCTCACTATTTAG 943
.||.|||||||....|||.||.||||||||||||||.|||||.|||.|||
BPUM_1341___a 894 AGACATTTTAACTTCACTCGTTGAAACAGATGAAGGCTCTCATTATCTAG 943
BSNT_02409___ 944 GTGAAGTGGCACTTGTTCCTTACGATTCGCCTATATCACAATCAAACATT 993
|||||||.||.|||||.||..|.|||||.||.||.|||.|.|||||.|||
BPUM_1341___a 944 GTGAAGTTGCTCTTGTACCAGATGATTCACCAATCTCAAATTCAAATATT 993
BSNT_02409___ 994 CTTTTCTATAACACGCTGTTTGATGAAAACGCGTCAAATCATTTGGCGAT 1043
||.|..||.||.||.||.|.||||||||||||.||.|||||..|.||.||
BPUM_1341___a 994 CTCTATTACAATACCCTTTATGATGAAAACGCATCGAATCACCTTGCCAT 1043
BSNT_02409___ 1044 CGGAAGCGCCTATGCCTTTAATATTGAAGGCGGAAAGCAGATGTCTCGTG 1093
|||.||||..|||||.||.|||||.|||||||||||..|||||...||||
BPUM_1341___a 1044 CGGCAGCGGATATGCGTTCAATATCGAAGGCGGAAAAGAGATGAAACGTG 1093
BSNT_02409___ 1094 AAGA-------GCTTGTCAAAGAAGGCCTAAATGAGAGCATTACACACGT 1136
|||| || ||..||..||||..|.||.|||||||||||
BPUM_1341___a 1094 AAGAATTGGATGC-------AGCTGGTGTAAACAACAGTATTACACACGT 1136
BSNT_02409___ 1137 GGACTTTATGATCGGTTCTAAGGATATGAATATTGACGGAATTACGGCAG 1186
.||.||.|||||.|||||.|||||.||||||||||||||.|||||...||
BPUM_1341___a 1137 CGATTTCATGATTGGTTCAAAGGAAATGAATATTGACGGTATTACAAAAG 1186
BSNT_02409___ 1187 ACGGGAAAAGAGAGCCTATCTTCAGAAACGGAAATTGGGCTTTTTAA 1233
||||||||.|.||.||.||||||.|.||.||.||.|||||..|||||
BPUM_1341___a 1187 ACGGGAAACGCGAACCGATCTTCCGTAATGGGAACTGGGCGATTTAA 1233
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