Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02418 and BPUM_1348

See Amino acid alignment / Visit BSNT_02418 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:54
# Commandline: needle
#    -asequence dna-align/BSNT_02418___adeC.1.24716.seq
#    -bsequence dna-align/BPUM_1348___adeC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02418___adeC-BPUM_1348___adeC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02418___adeC-BPUM_1348___adeC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02418___adeC
# 2: BPUM_1348___adeC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1869
# Identity:    1200/1869 (64.2%)
# Similarity:  1200/1869 (64.2%)
# Gaps:         273/1869 (14.6%)
# Score: 3559.0
# 
#
#=======================================

BSNT_02418___      1 TTGAATAAAGAAGCGCT----AG---TCAA-------TAGGCTGAATGCT     36
                     |||.||||.||   |||    ||   ||||       |||          
BPUM_1348___a      1 TTGGATAAGGA---GCTTTTCAGACATCAAATTGAGGTAG----------     37

BSNT_02418___     37 TCAGCCAAAAGACAAAAAGCTGATATCGTCATTAAAAACGGAAAAATCAT     86
                      ||||.||.|||.|||||||.|...||||.||||||.|.|..|||.||||
BPUM_1348___a     38 -CAGCAAAGAGAAAAAAAGCAGCCCTCGTAATTAAACATGCGAAAGTCAT     86

BSNT_02418___     87 GGACGTATATAATCAAGAATGGATATATGAAGATATTGCGATTACAGATG    136
                     |||.||.|.|||.||.|||||||||.|.|.||||.|.||..||..|.|||
BPUM_1348___a     87 GGATGTGTTTAACCAGGAATGGATAGACGCAGATGTCGCTGTTGAAAATG    136

BSNT_02418___    137 GAGTTATTGTAGGCCTCGGTGAGTATGAAGGCGAAAATATCA-----TTG    181
                     ||...||.||.||..|.||.|||||.||.||.|||     ||     |||
BPUM_1348___a    137 GACAAATCGTCGGGATAGGAGAGTACGAGGGAGAA-----CAGGAGCTTG    181

BSNT_02418___    182 ATGCAGAGGGACAAATGATTGTTCCGGGTTTTATTGATGGACATGTACAT    231
                     ||||||..||.||||||.||||.||.||||||||||||||.||.||.|||
BPUM_1348___a    182 ATGCAGTAGGTCAAATGCTTGTGCCTGGTTTTATTGATGGCCACGTTCAT    231

BSNT_02418___    232 ATTGAGTCGTCAATGGTTACACCGATTGAGTTCGCTAAAGCAGT-GTTGC    280
                     ||.|||||.||.||||||||.||....||.|||.|.|||||.|| ||| |
BPUM_1348___a    232 ATCGAGTCTTCTATGGTTACCCCTGCCGAATTCTCCAAAGCTGTCGTT-C    280

BSNT_02418___    281 CTCATGGCGTGACGACGGTTGTTACAGATCCGCATGAAATCGCGAATGTG    330
                     ||||.||.|||||.||.||.||.||||||||||||||||||||.||||||
BPUM_1348___a    281 CTCACGGTGTGACAACTGTCGTAACAGATCCGCATGAAATCGCCAATGTG    330

BSNT_02418___    331 TCTGGTGAAAAAGGGAT-TGTGTTTATGATTGAACAAGCTCGGCATACAC    379
                     ||.|||..||.|||.|| .|| ||||||.|.|||.||||   |.|.|.| 
BPUM_1348___a    331 TCAGGTATAACAGGCATCCGT-TTTATGCTGGAAGAAGC---GAAAAAA-    375

BSNT_02418___    380 CGCTG-----AATATCCATTTTATGCTTCCTTCCAGTGTGCCTGCCGCAA    424
                      ||||     .||||..||||.|||||.||||||.||||.||.||.|..|
BPUM_1348___a    376 -GCTGCCTTACATATTTATTTCATGCTGCCTTCCTGTGTACCGGCAGTCA    424

BSNT_02418___    425 GTTTTGAGCGATCAGGCGCAATTCTCAAAGCTGCCGATCTCAAGCCTTTT    474
                     |||||||.||||||||.||.|...|.|||||....|||.|.||||||.||
BPUM_1348___a    425 GTTTTGAACGATCAGGTGCTACATTAAAAGCGAAAGATTTAAAGCCTCTT    474

BSNT_02418___    475 TAT--GGAGAAGAAGAAGTATTAGGGCTGGCTGAAGTTATGGATTATGTG    522
                     |||  .||||||  |||||..|.||.||.||.||.||.|||||.||  ||
BPUM_1348___a    475 TATCAAGAGAAG--GAAGTGCTTGGTCTTGCAGAGGTGATGGACTA--TG    520

BSNT_02418___    523 TCG--GTTCAGCAGGCTGAAGAAGACATGGTTCAGAAACTGCTCGATGCC    570
                     |||  ||..|||||||.||||||||.|||.||||.||.|||||.||||| 
BPUM_1348___a    521 TCGGTGTGGAGCAGGCAGAAGAAGATATGCTTCAAAAGCTGCTTGATGC-    569

BSNT_02418___    571 CGTGTGGCAGGA----AAAAGGATAGACGGTCATTTAGCTGGTTTATCAA    616
                        |...||.||    |||..|||.||.||.|||.||||.||.||   ||
BPUM_1348___a    570 ---GCAACACGAGAATAAACTGATTGATGGCCATCTAGCAGGCTT---AA    613

BSNT_02418___    617 CAGACC---TCATTAACATTTACAGAACCGCCTTTGTCTTAAAC-GACCA    662
                     ||||||   |.||.|||.|.|||.|.||.||...|||| .|||| |||||
BPUM_1348___a    614 CAGACCGATTAATCAACGTCTACCGGACAGCGAGTGTC-CAAACAGACCA    662

BSNT_02418___    663 TGAAGT---AACATCGAAGGAAGAAGCCCTTAATCGTATCAGAAGAGGCA    709
                     |||.||   ||||.|..||   |||||||||.|.|||.|.|.||||||.|
BPUM_1348___a    663 TGAGGTGACAACAGCACAG---GAAGCCCTTGAACGTGTAAAAAGAGGTA    709

BSNT_02418___    710 TGTATGTCATGATGCGTGAAGGATCAGTCGCCAAAAACACGCTCAATGTG    759
                     |||||||.|||.||.|.||||||||.||.|||||||||..|...|||||.
BPUM_1348___a    710 TGTATGTGATGCTGAGAGAAGGATCTGTTGCCAAAAACGTGAAAAATGTT    759

BSNT_02418___    760 CTTCCGGCGGTGAATGAAAAGAACGCACGCCGTTTCTTTTTTTGTACGGA    809
                     .|.||.||.||.|||||||||||.||.||.||.||.||.||||||||.||
BPUM_1348___a    760 TTACCCGCTGTCAATGAAAAGAATGCGCGACGCTTTTTCTTTTGTACAGA    809

BSNT_02418___    810 TGATAAGCATGTGGATGATTTATTGTCAGAGGGAAGTGTAAACCATCAGG    859
                     ||||||.|||.||||||||.||.||.||.||||||||.|..|..|.||.|
BPUM_1348___a    810 TGATAAACATTTGGATGATCTAATGGCACAGGGAAGTATTGATGAGCAAG    859

BSNT_02418___    860 TGAAAATGGCGATTCAAGCTGGACTTGATCCGTTTTTAGCCTATCAATTA    909
                     |....|||.|.||..|||..|||.|.|||||.||||||||.||||||.|.
BPUM_1348___a    860 TACGGATGTCCATAAAAGAAGGATTAGATCCATTTTTAGCTTATCAAATG    909

BSNT_02418___    910 GGAAGCCTCAATGCGGCCGAATGCTACGG-ATTAGATACAAAGGGAGCGA    958
                     ||||||.|.|||||.||.||.||.|..|| .||| |.|||||||||||.|
BPUM_1348___a    910 GGAAGCTTAAATGCCGCAGAGTGTTTTGGTCTTA-AAACAAAGGGAGCCA    958

BSNT_02418___    959 TTGCCCCGGGTTATGACGCTGATTTACTCTTTGTATCTGATTTGGAAAAT   1008
                     ||||.||.||.|||||.||||||||..|..|.||.||.|           
BPUM_1348___a    959 TTGCACCAGGCTATGATGCTGATTTTATGCTCGTTTCAG-----------    997

BSNT_02418___   1009 GTCACTGTCACAATGACGATGGTAAAAGGGCA------------GACT--   1044
                        |||.|||..|||..|||..||.|||.|.|            ||.|  
BPUM_1348___a    998 ---ACTTTCATCATGTAGATATTACAAGCGTATTTATCGCAGGTGAATTG   1044

BSNT_02418___   1045 GTTG--CTGAA--GACAGCA-AAGCGGTCTATC---AGGATCATGCTTCA   1086
                     ||||  |.|||  ||.||.| ||||.|..|.||   |.||||        
BPUM_1348___a   1045 GTTGCACAGAACGGAGAGTACAAGCCGAGTGTCGAAAAGATC--------   1086

BSNT_02418___   1087 ACTGCAGCACCAGATCAGGCACTGCTTGAT-----TCTGTT-AAGC--TT   1128
                           ||||| ||    ||.|.||.|.||     |||||| |.||  |.
BPUM_1348___a   1087 ------GCACC-GA----GCCCAGCATTATTACAATCTGTTCATGCCATA   1125

BSNT_02418___   1129 GCTGCTCCTCTTAACAAACAGGA----TTTTCA-TATGCCAAT--CGATT   1171
                     |.||.||         ||.||||    .||.|| ||  ||.||  ||..|
BPUM_1348___a   1126 GATGTTC---------AAGAGGAAGACATTGCACTA--CCTATTACGGGT   1164

BSNT_02418___   1172 CAGAGCAGCAAATCAATGTCATTCAAATCATACCAAATCAGCTTGAAACA   1221
                       ||.|||||.||.||||||||.|..||.||.||.|||||||||||||||
BPUM_1348___a   1165 --GATCAGCATATGAATGTCATCCGTATTATTCCGAATCAGCTTGAAACA   1212

BSNT_02418___   1222 AGATTAGTACAAGT-TCCGGCTCCT-----GATGCCCGCG--AATTT--G   1261
                     |..||||.|||||| |    |||||     .|||..|| |  |||||  .
BPUM_1348___a   1213 AAGTTAGAACAAGTCT----CTCCTTCAGAAATGAACG-GACAATTTACA   1257

BSNT_02418___   1262 AGCCTGACACTG--AGTTTGATTTGTTAAAGAT--TGCAGTTGTCGAGCG   1307
                     ||  |||.||.|  ||  .|||.|.|||||.||  |||  ||||.||.||
BPUM_1348___a   1258 AG--TGATACAGGCAG--AGATGTATTAAAAATGGTGC--TTGTTGAACG   1301

BSNT_02418___   1308 GCATAAAGGAT----TGAAAGAAACCGGACTTGGTG------TTGTGAAA   1347
                     .|||.||||.|    |||||          |.||||      ||||.|..
BPUM_1348___a   1302 TCATCAAGGTTTATCTGAAA----------TGGGTGTAGGAATTGTCAGC   1341

BSNT_02418___   1348 GGTTTTGGATTCAAGAGCGGAGCGATTGCCACAACCATTTCACACGACTC   1397
                     ||.||.||..||||....||.||.|||||.|||||..||.||||.||.||
BPUM_1348___a   1342 GGCTTCGGCATCAAACAAGGTGCAATTGCAACAACGGTTGCACATGATTC   1391

BSNT_02418___   1398 CCATAATATTATTGCTGTCGGAACGAATGATGAGGATAT------CGCG-   1440
                     .|||||..|.|||||.|||||.||.|||||||..|||||      .||| 
BPUM_1348___a   1392 ACATAACTTAATTGCAGTCGGCACAAATGATGCTGATATTATCAAAGCGA   1441

BSNT_02418___   1441 --GCGGCAGTTAATAAGCTGCAGGAAATTGGCGGAGGATTAACGATTATA   1488
                       |.||| ||||| |||..|||       |||||.||.||.||..||.|.
BPUM_1348___a   1442 TTGAGGC-GTTAA-AAGAAGCA-------GGCGGCGGTTTGACTGTTGTT   1482

BSNT_02418___   1489 AAAAATGGGGAAG--AGCTCCATTCAGTACCGTTGCCGATTGCAGGGTTA   1536
                     |||.| ||||.||  | ||.|||.|..|.||.||.||.||..|.||.||.
BPUM_1348___a   1483 AAAGA-GGGGCAGTCA-CTTCATACGCTGCCATTACCAATCTCTGGTTTG   1530

BSNT_02418___   1537 TTATCCGACCAATCTGCAGAGCAAGTGAATCAAAGCTTGCTGACGCTTCA   1586
                     ||.||.||.||..|.|||.|.|..||.|||.|||||.|.|...|.|||||
BPUM_1348___a   1531 TTGTCAGATCAGCCGGCACATCTCGTCAATGAAAGCCTTCATTCACTTCA   1580

BSNT_02418___   1587 TGA-----TAAA-----------TTGCCGTTAATCGGTTTCACAGGCGGA   1620
                     |||     ||||           ||.|| |||                ||
BPUM_1348___a   1581 TGAAGCGCTAAAAGAAACTGGCTTTTCC-TTA----------------GA   1613

BSNT_02418___   1621 -TTTAATCCATTTTTGACATTGTCGTTTTTAGCTTTGCCTGTCATTCCTG   1669
                      ||||||||.||||||||..|.||.||.||.||..|.||.||||||||||
BPUM_1348___a   1614 CTTTAATCCGTTTTTGACGCTTTCTTTCTTGGCACTTCCAGTCATTCCTG   1663

BSNT_02418___   1670 ATATTAAAATGACGACTACGGGATTATTCGATGT-AAAATCATTTCAACA   1718
                     ||.|.||||||||.||.|..||.|||||.||||| |.||.| |||||.||
BPUM_1348___a   1664 ATGTGAAAATGACAACAAAAGGCTTATTTGATGTCAGAAAC-TTTCAGCA   1712

BSNT_02418___   1719 CATATCACTGCAATAA---   1734
                     |.|..|..|.||||.|   
BPUM_1348___a   1713 CCTCCCTATTCAATCATAA   1731


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