Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02431 and BPUM_1356
See
Amino acid alignment /
Visit
BSNT_02431 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:54
# Commandline: needle
# -asequence dna-align/BSNT_02431___pdhB.1.24716.seq
# -bsequence dna-align/BPUM_1356___pdhB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02431___pdhB-BPUM_1356___pdhB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02431___pdhB-BPUM_1356___pdhB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02431___pdhB
# 2: BPUM_1356___pdhB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 979
# Identity: 854/979 (87.2%)
# Similarity: 854/979 (87.2%)
# Gaps: 2/979 ( 0.2%)
# Score: 3758.0
#
#
#=======================================
BSNT_02431___ 1 ATGGCGCAAATGACAATGATTCAAGCAATCACGGATGCGTTACGCACAGA 50
||||||||||||||||||||||||||.|||||.|||||||||||||||||
BPUM_1356___p 1 ATGGCGCAAATGACAATGATTCAAGCGATCACTGATGCGTTACGCACAGA 50
BSNT_02431___ 51 ACTGAAAAATGACGAAAATGTCTTAGTTTTCGGAGAAGACGTTGGTGTAA 100
||||||||||||||||||.||..|.|||||||||||||||||||||..||
BPUM_1356___p 51 ACTGAAAAATGACGAAAACGTTCTCGTTTTCGGAGAAGACGTTGGTAAAA 100
BSNT_02431___ 101 ACGGCGGCGTATTCCGTGCGACAGAAGGATTGCAAAAAGAATTCGGTGAA 150
||||||||||||||||||||||.|||||||||||||||||.||.|||||.
BPUM_1356___p 101 ACGGCGGCGTATTCCGTGCGACTGAAGGATTGCAAAAAGAGTTTGGTGAG 150
BSNT_02431___ 151 GACCGTGTGTTTGACACGCCACTTGCTGAATCTGGTATCGGCGGTCTTGC 200
||.|||||.||.||.||.||||||||||||||||||||.|||||||||||
BPUM_1356___p 151 GATCGTGTATTCGATACACCACTTGCTGAATCTGGTATTGGCGGTCTTGC 200
BSNT_02431___ 201 CCTTGGTTTAGGCTTAAACGGCTTCCGTCCGGTAATGGAAATCCAATTCT 250
..||||..|.||..||.|.|..|||||.||.|||||||||||.|||||||
BPUM_1356___p 201 AATTGGCCTTGGACTACAAGAATTCCGCCCAGTAATGGAAATTCAATTCT 250
BSNT_02431___ 251 TCGGATTTGTCTATGAAGTAATGGATTCAGTTTCTGGCCAAATGGCTCGT 300
|||||||.||.||.||||||.|.|||||.||||||||.||||||||||||
BPUM_1356___p 251 TCGGATTCGTTTACGAAGTATTAGATTCTGTTTCTGGACAAATGGCTCGT 300
BSNT_02431___ 301 ATGCGCTACCGTTCTGGCGGACGCTGGACTTCACCTGTAACAATTCGTTC 350
|||||.|||||||||||||||||||||..|||.||.||.|||||.|||||
BPUM_1356___p 301 ATGCGTTACCGTTCTGGCGGACGCTGGCATTCTCCAGTGACAATCCGTTC 350
BSNT_02431___ 351 TCCATTCGGCGGCGGTGTTCATACTCCTGAACTTCACGCTGACAGCTTGG 400
|||||||||.||.||.|||||.||.|||||.|||||||||||||||||.|
BPUM_1356___p 351 TCCATTCGGTGGGGGAGTTCACACACCTGAGCTTCACGCTGACAGCTTAG 400
BSNT_02431___ 401 AAGGTCTTGTTGCACAACAGCCTGGTATCAAAGTTGTGATTCCATCAACT 450
||||||||.|.||.|||||||||||||||||.||.||.|||||.|||||.
BPUM_1356___p 401 AAGGTCTTATCGCTCAACAGCCTGGTATCAAGGTGGTCATTCCTTCAACA 450
BSNT_02431___ 451 CCTTACGATGCCAAAGGACTTTTAATTTCTGCGATCAGAGACAATGATCC 500
|||||||||||.||||||||.|||||||||||.|||.|.||.||||||||
BPUM_1356___p 451 CCTTACGATGCAAAAGGACTATTAATTTCTGCAATCCGTGATAATGATCC 500
BSNT_02431___ 501 TGTTGTCTTCTTAGAGCATATGAAGCTTTACCGTTCTTTCCGTCAGGAAG 550
.|||||.|||.|.|||||||||||.||.||.||.||||||||||||||||
BPUM_1356___p 501 GGTTGTATTCCTTGAGCATATGAAACTGTATCGCTCTTTCCGTCAGGAAG 550
BSNT_02431___ 551 TTCCTGAAGAAGAATACACAATTGAGCTTGGAAAAGCTGACGTGAAACGT 600
|||||||||||||.|||||||||||..|.||.||||||||||||||||||
BPUM_1356___p 551 TTCCTGAAGAAGAGTACACAATTGAAATCGGTAAAGCTGACGTGAAACGT 600
BSNT_02431___ 601 GAAGGTACTGATCTTTCAATCATTACTTACGGCGCAATGGTTCATGAATC 650
||||||.||||.|||||||||||.||||||||.|||||||||||.|||||
BPUM_1356___p 601 GAAGGTTCTGACCTTTCAATCATCACTTACGGTGCAATGGTTCACGAATC 650
BSNT_02431___ 651 ATTAAAAGCTGCTGAGGAGCTTGAAAAAGACGGCATTTCTGCTGAAGTTG 700
|.|.|||||||||||.||.|||||||||||.|||.|||||||||||||..
BPUM_1356___p 651 ACTTAAAGCTGCTGAAGAACTTGAAAAAGAAGGCGTTTCTGCTGAAGTAA 700
BSNT_02431___ 701 TCGACCTTCGTACAGTAAGCCCACTTGATATCGATACAATCATCGCTTCT 750
||||||||||||||||||||||.||||||||.||.|||||.|||||||||
BPUM_1356___p 701 TCGACCTTCGTACAGTAAGCCCGCTTGATATTGAAACAATTATCGCTTCT 750
BSNT_02431___ 751 GTAGAAAAAACAGGACGCGCGATTGTCGTTCAAGAGGCACAAAAACAAGC 800
||.|||||||||||.||.|||||.||.||||||||.||||||||||||||
BPUM_1356___p 751 GTTGAAAAAACAGGTCGTGCGATCGTTGTTCAAGAAGCACAAAAACAAGC 800
BSNT_02431___ 801 CGGTATTGCTGCAAACGTAGTAGCAGAAATTAATGACCGTGCGATCCTGA 850
.|||||||||||||||||||||||.|||||.||||||.|.||.|||||.|
BPUM_1356___p 801 TGGTATTGCTGCAAACGTAGTAGCTGAAATCAATGACAGAGCAATCCTTA 850
BSNT_02431___ 851 GCTTGGAAGCACCTGTACTTCGCGTTGCAGCGCCAGATACAGTATTTCCT 900
||.|.||||||||.||||||||.||.||.||.||.|||||.||||||.||
BPUM_1356___p 851 GCCTAGAAGCACCAGTACTTCGTGTAGCTGCACCTGATACTGTATTTGCT 900
BSNT_02431___ 901 TTCTCTCAAGCGGAGAGCGTATGGCTTCCAAACCATAAAGACGTTCTTGA 950
|||||||||||.||||||||||||||||||||||||||||||||.|||||
BPUM_1356___p 901 TTCTCTCAAGCTGAGAGCGTATGGCTTCCAAACCATAAAGACGTGCTTGA 950
BSNT_02431___ 951 AACAGC-AAGAAAAGTACTTGAATTTTAA 978
|||||| ||| |||||.||||||||||||
BPUM_1356___p 951 AACAGCTAAG-AAAGTTCTTGAATTTTAA 978
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.