Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02436 and BPUM_1361
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:55
# Commandline: needle
# -asequence dna-align/BSNT_02436___speA.1.24716.seq
# -bsequence dna-align/BPUM_1361___speA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02436___speA-BPUM_1361___speA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02436___speA-BPUM_1361___speA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02436___speA
# 2: BPUM_1361___speA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1538
# Identity: 1099/1538 (71.5%)
# Similarity: 1099/1538 (71.5%)
# Gaps: 112/1538 ( 7.3%)
# Score: 3940.5
#
#
#=======================================
BSNT_02436___ 1 ------------------TTGTCGCAACATGAAACACCCTTATACACAGG 32
|||||.||||||||.||||||||||||||.||
BPUM_1361___s 1 ATGAAGGTGGGAAAGCAATTGTCACAACATGATACACCCTTATACACTGG 50
BSNT_02436___ 33 ACTGAAAAAGCATGCAAGCAGAC--AGCCTGTTCAATTCCACATTCCCGG 80
|||.|||||.||||| |||| || |.||.||||||||.||||||||.||
BPUM_1361___s 51 ACTAAAAAAACATGC-AGCA-ACCAATCCAGTTCAATTTCACATTCCAGG 98
BSNT_02436___ 81 CCATAAAAAAGGGGCAGGAATGGACCCAGAATTCAGACAATTTATCGGTG 130
||||||||||||.||.|||||||||||.|||||.|||..|||.||.||.|
BPUM_1361___s 99 CCATAAAAAAGGAGCCGGAATGGACCCTGAATTTAGAGCATTCATTGGCG 148
BSNT_02436___ 131 AAAACGCGTTAAGCATAGATTTAATTAATATTGAACCATTAGACGATCTG 180
|.||.||.||||||||.|||.|.||||||||.|||||..|.||.|||.|.
BPUM_1361___s 149 ACAATGCATTAAGCATTGATCTCATTAATATAGAACCTCTTGATGATTTA 198
BSNT_02436___ 181 CACGCGCCAAAAGGCATTATTAAACAAGCACAAGATCTGGCTGCTGAAGC 230
|||.|.||...|||.||.||.|||.|||||||||||.|.|||||||||||
BPUM_1361___s 199 CACTCACCTCGAGGAATGATAAAAGAAGCACAAGATTTAGCTGCTGAAGC 248
BSNT_02436___ 231 ATTTGGAGCGGATCATACATTTTTTTCTGTTCAAGGAACAAGCGGCGCCA 280
|||.||.||.||.|||||.|||||.|.|.|||||||||||||||||||||
BPUM_1361___s 249 ATTCGGTGCTGACCATACGTTTTTCTGTATTCAAGGAACAAGCGGCGCCA 298
BSNT_02436___ 281 TTATGACAATGGTAATGGCTGTTTGCGGACCTGGTGATAAAATTATTATT 330
|.|||||||||||.|||.|.||.|||||||||||.|||||||||||..||
BPUM_1361___s 299 TCATGACAATGGTGATGACCGTATGCGGACCTGGGGATAAAATTATCGTT 348
BSNT_02436___ 331 CCAAGAAATGTTCATAAATCAATTATGACAGCTATTGTATTTTCCGGAGC 380
||..|.||.||.|||||||||||||||.|.||.|||||||||||.||.||
BPUM_1361___s 349 CCGCGTAACGTCCATAAATCAATTATGTCCGCGATTGTATTTTCTGGCGC 398
BSNT_02436___ 381 GGTTCCAATTTTTATTCATCCTGAAATTGACAATGAATTGGGCATCTCCC 430
.|||||..||||||||||.||.|||||.|||||.||..|.||||||||.|
BPUM_1361___s 399 AGTTCCTGTTTTTATTCACCCAGAAATAGACAAAGAGCTTGGCATCTCTC 448
BSNT_02436___ 431 ACGGCATTACACTTGAATCTGCTAAACGGGCGCTTACCGAACATCCGGAT 480
||||||||||||..|||||.||.|||...||.||.||.||.|||||.|||
BPUM_1361___s 449 ACGGCATTACACCAGAATCAGCGAAAAAAGCACTCACAGAGCATCCAGAT 498
BSNT_02436___ 481 GCAAAAGGGCTTCTCGTCATCAACCCGACATATTTCGGTGTTGCAGCCGA 530
||.|||||.||.||.||.||.||.|||||.||||||||.|||.||||.||
BPUM_1361___s 499 GCCAAAGGTCTACTTGTGATTAATCCGACGTATTTCGGCGTTTCAGCAGA 548
BSNT_02436___ 531 CTTAAAAAGCATCGTAGAACTCGCTCATTCGTTTGATGTGCCAGTGCTTG 580
|||||||...||.|||||..|.||.|||||.|||.|||||||.||.||||
BPUM_1361___s 549 CTTAAAATCGATTGTAGACATTGCCCATTCATTTCATGTGCCTGTCCTTG 598
BSNT_02436___ 581 TCGATGAAGCACACGGCGTTCACATTCATTTTCACGACGAATTGCCGCTA 630
|||||||.|||||||||||.||.||||||||||||||..|..|.||.|||
BPUM_1361___s 599 TCGATGAGGCACACGGCGTGCATATTCATTTTCACGATAAGCTCCCACTA 648
BSNT_02436___ 631 TCGGCTATGCAGGCAGGAGCGGACATAGCAGCGACAAGTGTACACAAGCT 680
||.||.|||||.|||||.||.|||||.|||||.||||||||.||.||.||
BPUM_1361___s 649 TCAGCCATGCAAGCAGGTGCAGACATGGCAGCAACAAGTGTCCATAAACT 698
BSNT_02436___ 681 GGGCGGATCACTCACGCAAAGTTCGATTTTAAACATGAGAGAGGGCCTTG 730
.|||||.||.||.||.||.||.||.||||||||.||||..||.||.|||.
BPUM_1361___s 699 TGGCGGTTCCCTTACTCAGAGCTCTATTTTAAATATGAAGGAAGGGCTTA 748
BSNT_02436___ 731 TATCAAAAGACAGAGTGCAATCAATACTGAGCATGCTGACAACTACGTCA 780
|.||||||||..|.||||||||.||..||||||||.||||.||.|||||.
BPUM_1361___s 749 TCTCAAAAGATCGTGTGCAATCGATTTTGAGCATGTTGACGACAACGTCT 798
BSNT_02436___ 781 ACTTCTTACTTGCTTCTT-GCTTCTTTGGATGTTGCCAGAAAACGCCTTG 829
||.|||||.|||| |||| ||.||..|.|||||.||..||||.||..|.|
BPUM_1361___s 799 ACATCTTATTTGC-TCTTGGCGTCACTTGATGTCGCTCGAAAGCGATTAG 847
BSNT_02436___ 830 CAACAGAAGGCCA-CCAGCTTGCTGAGGAAACACTAAAGCTTGCC----- 873
|.||.|||||..| .|| |||||.||.||| |||
BPUM_1361___s 848 CCACTGAAGGAAAGGCA-CTTGCAGATGAA------------GCCATCCG 884
BSNT_02436___ 874 --------AATCAGACGAGAGATCGCCTCAACCAGATTGAAGGCATTTAT 915
|||||| ||||..|.||..|.||.||.|||||.||||||...
BPUM_1361___s 885 TTTAGCGGAATCAG-CGAGGAACCGTTTGAATCAAATTGATGGCATTACG 933
BSNT_02436___ 916 TGTGTCGGTTCTGAGATTCTTGGGTCGAAAGCAGCTTACAGCTATGAT-- 963
|||.|.||....||.||.||.||.| ||||||..|..||||||
BPUM_1361___s 934 TGTATTGGCAAGGAAATACTCGGTT------CAGCTTCTACGTATGATTA 977
BSNT_02436___ 964 ----CCGACAAAATTGATTATCTCTGTGAAAAGTCTTGGCCTGACAGGAC 1009
||.||||||||.|||||.||..|.|||...|||||.||.|..||.|
BPUM_1361___s 978 TGACCCAACAAAATTAATTATTTCAATTAAAGACCTTGGGCTCAATGGTC 1027
BSNT_02436___ 1010 ATGACGTGGAAAAATGGCTTCGTGAATCCTTTAATATTGAGGTTGAGCTT 1059
|.||.||.|||||||||||..|.|||..||.....|||||.||.||||||
BPUM_1361___s 1028 ACGATGTCGAAAAATGGCTGAGAGAAAGCTACCGGATTGAAGTAGAGCTT 1077
BSNT_02436___ 1060 TCTGATCTGTACAATATTTTGTGTATTTTCACTCCTGGTGA--CAGCCAA 1107
|||||.||.|||||.||.||.||||||.|.||.|||||||| |.|...|
BPUM_1361___s 1078 TCTGACCTTTACAACATATTATGTATTGTGACCCCTGGTGATTCTGATGA 1127
BSNT_02436___ 1108 AA----TGATGCAGACCGGCTTGTAGA----GGCTTTAACTGAGATCGCA 1149
|| .||||| ||| || |||..|.|..||.||.|
BPUM_1361___s 1128 AACAATCGATGC------GCT----GATCACGGCCATGAAAGACATTG-- 1165
BSNT_02436___ 1150 CAGCAA-------ATGTCAGA-------ACAAGATGTAACACATCAGCAA 1185
|.|||| |.||.||| ||||||.|| |
BPUM_1361___s 1166 CCGCAACCTCTACAAGTGAGAGCGGCACACAAGAGGT------------A 1203
BSNT_02436___ 1186 ACTGAGGTTCTGCTTCCAGAAATACCTTTATTGGCAATGACTCCGCGTGA 1235
|||||.||..||||.||.||.||.||.|.|.|.||.|||||.||||||||
BPUM_1361___s 1204 ACTGAAGTCTTGCTACCTGAGATTCCATCACTTGCCATGACGCCGCGTGA 1253
BSNT_02436___ 1236 TGCTTTCTATGCAAATACGGAAGTCATCCCATTAAAAGAAGCATCCGGAC 1285
|||.||.||.||.|..||.|||||..|.||.||.|||||||||.|.||.|
BPUM_1361___s 1254 TGCCTTTTACGCCACAACAGAAGTAGTTCCGTTTAAAGAAGCAGCGGGCC 1303
BSNT_02436___ 1286 GGATTATTGCTGAATTTGTCATGGTATATCCGCCTGGTATTCCAATCTTC 1335
|.||.||.||.||.|||||||||||.||.|||||.||.||.||.||.||.
BPUM_1361___s 1304 GCATCATCGCAGAGTTTGTCATGGTGTACCCGCCAGGCATACCTATTTTT 1353
BSNT_02436___ 1336 ATCCCAGGAGAAATTATTACAGAAGAAAACATCAGCTACATTTTTAAAAA 1385
||.||||||||||||||.|||||||||||.|||..|||.||.||||||||
BPUM_1361___s 1354 ATACCAGGAGAAATTATCACAGAAGAAAATATCTCCTATATCTTTAAAAA 1403
BSNT_02436___ 1386 CCTTGACGCAGGCCTCCCTGTTCAAGGACCTGAGGACTCGACTTTACATA 1435
|.||||....||.||||||||.||||||||.||.||.||.||..|..|.|
BPUM_1361___s 1404 CATTGAAATTGGTCTCCCTGTGCAAGGACCAGAAGATTCAACGCTGGAAA 1453
BSNT_02436___ 1436 TGATCCGAGTCATCAAAGAACAAAAAGCAATTCAATAA 1473
||||.||.|||||.||||||||||||.|||||..||||
BPUM_1361___s 1454 TGATTCGTGTCATTAAAGAACAAAAACCAATTTTATAA 1491
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