Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02438 and BPUM_1363
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:55
# Commandline: needle
# -asequence dna-align/BSNT_02438___yktB.1.24716.seq
# -bsequence dna-align/BPUM_1363.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02438___yktB-BPUM_1363.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02438___yktB-BPUM_1363.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02438___yktB
# 2: BPUM_1363
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 655
# Identity: 473/655 (72.2%)
# Similarity: 473/655 (72.2%)
# Gaps: 35/655 ( 5.3%)
# Score: 1550.5
#
#
#=======================================
BSNT_02438___ 1 ATGACACAAATGCGTTTCACTGAAGAGGACTTTAACACATTTACAATAGA 50
||||...||||||||||.|..||.||.||.|||.|.|||||||||.|.||
BPUM_1363 1 ATGAGTGAAATGCGTTTTAGAGATGAAGATTTTGAGACATTTACAGTTGA 50
BSNT_02438___ 51 AGGCTTAGACGCGCGCATGGAAGTATTAAAAGAGACGGTCCGTCCGAAGC 100
.||.|||||.|..||.|||...|||||||||||.|..||||||||.||||
BPUM_1363 51 CGGTTTAGATGAACGAATGACGGTATTAAAAGAAAGAGTCCGTCCAAAGC 100
BSNT_02438___ 101 TTACAGCTCTAGGCGAACATTTTGCCCCAACTT-TATCAGCTTTAACCGG 149
||..|||.||.||.|||||.|||||.|| |||| |.||..||.|.||.||
BPUM_1363 101 TTGAAGCACTTGGAGAACACTTTGCACC-ACTTCTTTCTTCTATTACAGG 149
BSNT_02438___ 150 AGATGAAATGTTTCCGCATGTGGCAAAGCATGCAAGAAGATCCGTCAATC 199
.||.|||||||||...||.||.|||||||||||.||||||||.|||||||
BPUM_1363 150 TGACGAAATGTTTGTACACGTCGCAAAGCATGCTAGAAGATCAGTCAATC 199
BSNT_02438___ 200 CCCCTGCTGACAGCTGGGTGGCGTTCGCAAACAGCAAAAGAGGCTATAAA 249
|.|||..|||.|..|||||.||.||.|||||||||||..|.||.||||||
BPUM_1363 200 CGCCTAATGATACGTGGGTTGCTTTTGCAAACAGCAAGCGTGGGTATAAA 249
BSNT_02438___ 250 AAACTGCCACATTTCCAAATTGGTTTATGGGAAAGCCACGTCTTTGTGTG 299
|||||.||.|||||.||||||||..|.|||.|||..||.||||||||.||
BPUM_1363 250 AAACTCCCTCATTTTCAAATTGGGCTTTGGAAAACACATGTCTTTGTTTG 299
BSNT_02438___ 300 GTTCGCGATTATTTATGAATCCCCTATCAAAGAAGAATACGG-CAAATTG 348
|||.||..|||||||||||||.|||.|.||||..|||||.|| ||..|
BPUM_1363 300 GTTTGCTCTTATTTATGAATCTCCTGTAAAAGGCGAATATGGTCAGCT-- 347
BSNT_02438___ 349 CTT--GAAATGAACCAAGAAACCATTACGAAAAATATCCCTGACA--GCT 394
||| .|||.||| |.|||.||||||..|||.||.||.|| ||| ..|
BPUM_1363 348 CTTCGAAAAAGAA-CTAGATACCATTCAGAAGAAAATACC--ACAAGATT 394
BSNT_02438___ 395 TCGTTTGGTCTGCAGATCACACAAAACCGGGAGTACAT---AAACAGTCT 441
|.|||||||||..||||||.|..|||||.|..|| ||| ..|||| .
BPUM_1363 395 TTGTTTGGTCTAAAGATCATATGAAACCAGATGT-CATGCGTCACAG--C 441
BSNT_02438___ 442 GAAATGGA--CAAGGAACAGCTGAAGACACTGTTTGAGCGTTTGCAGACT 489
|||.|.|| || ||||||.||||.|||||||||||.|||.|.||.||.
BPUM_1363 442 GAACTCGATGCA--GAACAGTTGAAAACACTGTTTGAACGTGTCCAAACG 489
BSNT_02438___ 490 GTAAAGAAAGCTGAGCTGTTATGCGGCATCCAGCTCCAAAAAGAAGAAGT 539
|||||||||||.|||||..|.||||||||.|||||.|..|.|||||||||
BPUM_1363 490 GTAAAGAAAGCCGAGCTTCTTTGCGGCATTCAGCTACCTAGAGAAGAAGT 539
BSNT_02438___ 540 -GCTGAATATGAATAACCAGGAATTCCT-TCAGCGTATCGACGATGCCTT 587
|.|.|| ||||||||..|.||||||.| ||| ...||.||.||||||||
BPUM_1363 540 CGTTCAA-ATGAATAATGAAGAATTCTTATCA-AAAATTGAAGATGCCTT 587
BSNT_02438___ 588 --TAAGCAGCTTG-CTTTTCTGTACCGCCTCACCCAAAAAGTATCACAAG 634
.|| |.| || |.|.|||.||||||.|.||.||||||..||| .|
BPUM_1363 588 CCGAA-CGG--TGACATATCTATACCGCTTTACACAAAAACAATC---TG 631
BSNT_02438___ 635 CATAA 639
.||||
BPUM_1363 632 TATAA 636
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