Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02472 and BPUM_1380

See Amino acid alignment / Visit BSNT_02472 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:57
# Commandline: needle
#    -asequence dna-align/BSNT_02472___ctaB.1.24716.seq
#    -bsequence dna-align/BPUM_1380___ctaB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02472___ctaB-BPUM_1380___ctaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02472___ctaB-BPUM_1380___ctaB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02472___ctaB
# 2: BPUM_1380___ctaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 954
# Identity:     668/954 (70.0%)
# Similarity:   668/954 (70.0%)
# Gaps:          72/954 ( 7.5%)
# Score: 2220.0
# 
#
#=======================================

BSNT_02472___      1 ATGGCTAACTCCAGAATCTTAAA-------TGATACAGCTATAGACGGAC     43
                     .||||.||.||||       |||       .||..|||||||..|.||||
BPUM_1380___c      1 TTGGCAAATTCCA-------AAACAGCCGCGGAAGCAGCTATTCATGGAC     43

BSNT_02472___     44 AAATTGAAGAAACAACGGCATGGAAAGATTTTCTGTCCCTTATTAAAATA     93
                     ||||.|||.|||||||.||.||||||||||||||..|.||.||||||||.
BPUM_1380___c     44 AAATAGAAAAAACAACAGCTTGGAAAGATTTTCTTGCTCTGATTAAAATG     93

BSNT_02472___     94 GGGATCGTCAATTCTAACCTCATCACGACTTTCACTGGAATGTGGCTTGC    143
                     ||.|||||||||||.|||.||||.|||||.||.|||||||||||||||||
BPUM_1380___c     94 GGCATCGTCAATTCCAACTTCATTACGACATTTACTGGAATGTGGCTTGC    143

BSNT_02472___    144 ACTGCATATATCCGGTTTAAGTTTTTTAGGCAATATAAACACCGTTCTTC    193
                     ..|..||.|..|.||..|.|||||..|.||.|||.||.|.|..||.||..
BPUM_1380___c    144 GTTTTATTTTACAGGGATGAGTTTCCTTGGAAATCTAGATATTGTGCTGT    193

BSNT_02472___    194 TTACGTTAATCGGGTCTTCACTGATTATTGCGGGCTCCTGCGCGATCAAT    243
                     |.||..|.||.||.|||||.||.||||||||.||.||.|||||.||.|||
BPUM_1380___c    194 TAACAATGATTGGTTCTTCTCTTATTATTGCCGGTTCATGCGCCATTAAT    243

BSNT_02472___    244 AACTG-GTATGACCGGGACATTGACCATCTT-ATGGAGCGTACGAAAGTA    291
                     || || ||.||||||.||.||||| .||.|| |||||..|.||.|||..|
BPUM_1380___c    244 AA-TGCGTTTGACCGTGATATTGA-TATATTAATGGAAAGAACAAAAACA    291

BSNT_02472___    292 AGACCGACGGTTACGGGTAAAATTCAGCCGAGTCAGGCGTTATG-GTCTG    340
                     ||||||||||||||.|||||.|||||||||.|.||.||| |||| .|.||
BPUM_1380___c    292 AGACCGACGGTTACAGGTAAGATTCAGCCGGGGCAAGCG-TATGCATTTG    340

BSNT_02472___    341 GAATTTTGCTGGTTG--CTTTAGGATTGATCATGCTGCTGATGACAACTG    388
                     |.||||||||.||||  |||  |||.|.||||||||.|||||||||||.|
BPUM_1380___c    341 GTATTTTGCTTGTTGTACTT--GGACTCATCATGCTTCTGATGACAACCG    388

BSNT_02472___    389 T--CATGGCTGCTGTTATCGGTTTTATCGGAGTCTTTACGTATGTTGTAT    436
                     |  |||  |.||.||.||.||.|||||.||.||||||||.||||..||..
BPUM_1380___c    389 TAACAT--CAGCAGTGATTGGATTTATTGGCGTCTTTACTTATGCGGTTC    436

BSNT_02472___    437 TGTACACAATGTGGACGAAACGCCGCTATACGATTAACACAGTAGTAGGA    486
                     |.|||||.||||||.|.|||||.|..||.||.||.||.||.||..|.|||
BPUM_1380___c    437 TTTACACCATGTGGTCTAAACGTCATTACACCATCAATACCGTTATTGGA    486

BSNT_02472___    487 AGCGTTTCCGGTGCAGTGCCGCCGCTTATTGGATGGACGGCAGTGGAAGG    536
                     ||.||.||.||||||||||||||..|.||.||.|||||.||.||...|||
BPUM_1380___c    487 AGTGTATCTGGTGCAGTGCCGCCATTAATCGGCTGGACAGCTGTCACAGG    536

BSNT_02472___    537 GAATATCGGTGTCGTA-------GCATGGGTGTTATTCATGATTTTATTT    579
                     .|..||||       |       ||.|||||.||.||.||||||.|.||.
BPUM_1380___c    537 TACAATCG-------ACACAACGGCTTGGGTTTTGTTTATGATTATGTTC    579

BSNT_02472___    580 ATTTGGCAGATTCCTCACTTCTTAGCATTGGCTATTAAGAAAACAGAGGA    629
                     ||||||||.||.||.||||||.|..||.|.||.|||||||||||.||.||
BPUM_1380___c    580 ATTTGGCAAATCCCACACTTCCTGTCACTTGCAATTAAGAAAACGGAAGA    629

BSNT_02472___    630 TTACAG--AGCTGCAAATATTCCGATGCTTCCTGTCGTATACGGATTTGA    677
                     ||||.|  ||  |||..||||||.|||||.||.|||||.||.||.|||||
BPUM_1380___c    630 TTACCGTAAG--GCAGGTATTCCAATGCTGCCAGTCGTTTATGGCTTTGA    677

BSNT_02472___    678 AGTGACAAAAAGACAAATTATTGTGTGGGTTGCGTGCCTGATGCCGCTTC    727
                     |||.||.|||.|.|||||.||..|.|||...||.||.||..|.||.||||
BPUM_1380___c    678 AGTCACGAAACGCCAAATCATCATTTGGACAGCATGTCTTCTCCCACTTC    727

BSNT_02472___    728 CGTTTTTCCTTGG-----TAGCCTGGGTCTTCCGATTGTGATTCTCGGC-    771
                     |.||||||.|.||     |||..|||     ||||||||....||.||| 
BPUM_1380___c    728 CATTTTTCTTAGGTGGATTAGGATGG-----CCGATTGTCGCACTTGGCA    772

BSNT_02472___    772 --TTGCTGTTAAATATCGGCTGGCTGATTCTTGGCTTAATGGGATTCCGC    819
                       ||||||   |||||.||.|||||..|..|||||.|.|||||.||    
BPUM_1380___c    773 CATTGCTG---AATATTGGATGGCTTGTCATTGGCCTTATGGGCTT----    815

BSNT_02472___    820 TCCAA-GAATA----TCATGAAGTGGGCAACACAAATGTTCGTTTACTCG    864
                     |..|| ||| |    |||||||||||.||||.|..|||||||||||.||.
BPUM_1380___c    816 TAAAATGAA-AGACGTCATGAAGTGGTCAACGCTTATGTTCGTTTATTCA    864

BSNT_02472___    865 CTTAACTACATGACAATCTATTTCGTTGCCATGGTTGTCTTGACGCTTTT    914
                     .|.||.|||.|.||.||||.|||||||||.|||.||.|..|.||.||.||
BPUM_1380___c    865 TTAAATTACTTAACCATCTTTTTCGTTGCGATGATTATTATTACACTATT    914

BSNT_02472___    915 CTAA    918
                     |||.
BPUM_1380___c    915 CTAG    918


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02472 and BPUM_1380

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
