Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02478 and BPUM_1384

See Amino acid alignment / Visit BSNT_02478 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:58
# Commandline: needle
#    -asequence dna-align/BSNT_02478___ctaF.1.24716.seq
#    -bsequence dna-align/BPUM_1384___ctaF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02478___ctaF-BPUM_1384___ctaF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02478___ctaF-BPUM_1384___ctaF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02478___ctaF
# 2: BPUM_1384___ctaF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 350
# Identity:     239/350 (68.3%)
# Similarity:   239/350 (68.3%)
# Gaps:          37/350 (10.6%)
# Score: 785.5
# 
#
#=======================================

BSNT_02478___      1 ATGGTCGATAAAA----AAAGCAGAGGGCATATCAATAG-CGACCTTGAA     45
                     ||||...||||||    |||.|||        ||.|.|| |||.||||.|
BPUM_1384___c      1 ATGGGAAATAAAAACACAAATCAG--------TCTAAAGTCGATCTTGTA     42

BSNT_02478___     46 T---TTAAGAAAAAAAAGCATACCCGAGAGATGAAATATCAAGTCCTGTC     92
                     |   .|||.||.||||   ||.||..|||.|||||..||||..||.|.||
BPUM_1384___c     43 TACCGTAAAAAGAAAA---ATGCCGAAGAAATGAAGCATCAGCTCATTTC     89

BSNT_02478___     93 TTTTGGTTTAATGATCGGTCTTACGATTGTTGCATTTCTGACTGTGGCCA    142
                     |||.||.||.|||||.||..|.||..|||||||.|||.|.||..|.||..
BPUM_1384___c     90 TTTCGGCTTGATGATTGGATTAACCTTTGTTGCCTTTTTAACAATCGCTT    139

BSNT_02478___    143 CGGACGGTGTCGGCAGCTGGTT-----TACGATTCCTTTCATTATTT---    184
                     |.||.|..||.||.|.||||||     |||.||        ||||||   
BPUM_1384___c    140 CTGAAGACGTAGGAAACTGGTTCGCAGTACCAT--------TTATTTTAC    181

BSNT_02478___    185 TGCTAGCTGCAATTCAAGTCATCTTTCAGCTGTATTATTTCATGCATATG    234
                     ||||.||.|..|||||.||....||||||||.||||||||.|||||.|||
BPUM_1384___c    182 TGCTTGCCGTGATTCAGGTGGCTTTTCAGCTTTATTATTTTATGCACATG    231

BSNT_02478___    235 AATCAGAAAGGGCATGAGGCGCCGGCACTGTTTTTGTATTCAGGGGTGTT    284
                     ||.||.|||||||||||..|.||.|||.|||||.|.||||||||.|||||
BPUM_1384___c    232 AACCAAAAAGGGCATGAAACACCCGCATTGTTTCTTTATTCAGGTGTGTT    281

BSNT_02478___    285 TGTCGCGTTTATCACTGTGCTT-GCGTTTGTGACAATTATATGGTGGTAA    333
                     ||||||||||||.||.|| ||| ||.|||.||||.|||||.|||||||||
BPUM_1384___c    282 TGTCGCGTTTATTACCGT-CTTAGCCTTTTTGACGATTATTTGGTGGTAA    330


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