Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02483 and BPUM_1388
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:58
# Commandline: needle
# -asequence dna-align/BSNT_02483___ylbC.1.24716.seq
# -bsequence dna-align/BPUM_1388___ylbC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02483___ylbC-BPUM_1388___ylbC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02483___ylbC-BPUM_1388___ylbC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02483___ylbC
# 2: BPUM_1388___ylbC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1095
# Identity: 751/1095 (68.6%)
# Similarity: 751/1095 (68.6%)
# Gaps: 105/1095 ( 9.6%)
# Score: 2452.0
#
#
#=======================================
BSNT_02483___ 1 TTGAAAAATATATTGAGAGCAATGGTTATCCTTTTGATTATCTGCGGAAC 50
|||||||.|.|..|.|.|.||.|..|.|||||..|||||||.|..|||||
BPUM_1388___y 1 TTGAAAACTGTGCTCAAAACACTCCTCATCCTCCTGATTATATCTGGAAC 50
BSNT_02483___ 51 CTATGTTCTGTTTATTCAATATGGATCTGTTCCTG-AAAAGAAATCA--A 97
.||.||||||||||||||||||||||||...||.| ||||||||.|| |
BPUM_1388___y 51 GTACGTTCTGTTTATTCAATATGGATCTTCACCAGAAAAAGAAAACAGCA 100
BSNT_02483___ 98 ATGACAGCGAGCCTCAGGTGTCGAATGAGGAAGCGCAAAGCGGCAAACGA 147
|||| |.||| |||||||.|||||.|||.|....||||
BPUM_1388___y 101 ATGA-ACCGA-----AGGTGTCTAATGAAGAAACATCTAGCG-------- 136
BSNT_02483___ 148 ATACATATGCCGACTTCA--------------GGGTTATTGTCCTTCATG 183
|||.||||| ||| |||.|..|||||||.|||
BPUM_1388___y 137 ----ATAAGCCGA--TCAACATCCCGAAAAAGGGGCTCATGTCCTTTATG 180
BSNT_02483___ 184 GGCAAGCCCGCCGATGAAGTAACGAAAAAGCTTGGGGAACCTGAACGTAT 233
||.||..|..|..|.|||||....|||.||||.||.|||||.||.||.||
BPUM_1388___y 181 GGGAAATCTTCAAACGAAGTGCTTAAACAGCTGGGAGAACCAGATCGCAT 230
BSNT_02483___ 234 TGACCCTTCGGCTTATGATTACGATTGGTGGGTATACAATCAAGGTAAGG 283
|||.|||||.||.||||||||.||.||||||.|.|||||||||...|||.
BPUM_1388___y 231 TGATCCTTCCGCATATGATTATGACTGGTGGATCTACAATCAATCGAAGA 280
BSNT_02483___ 284 ATCAATATATCCAAATCGGGGTATTAAACAAT---AAAGTGGTCACATTA 330
|.||.|||||.|||.|.|||| ||||..|| ||||||||.|||||.
BPUM_1388___y 281 AGCACTATATTCAAGTAGGGG---TAAAGGATAGCAAAGTGGTGACATTG 327
BSNT_02483___ 331 TTCGC-------GTCGGG--TAATGATATT-AACGCCAAGCCTTTCAAAA 370
||.|| |.|||| .|||| || || ||.||.||||
BPUM_1388___y 328 TTTGCAACAGGAGACGGGCTCAATG---TTGAA-------CCGTTTAAAA 367
BSNT_02483___ 371 TTGGAGAATCAACTGGCGAAGTATTCAAGACCACCCAGGTGGCAC----C 416
|.||..||.|.||..|.||.|||||.||.|..||.||..|.|||| |
BPUM_1388___y 368 TCGGTCAAGCCACAAGTGAGGTATTTAAAAAAACACAAATTGCACCTTAC 417
BSNT_02483___ 417 ATTTGTGAATGTAGAGTATAAAGGAAATTCCTATCGGTTTGAATTTTCTG 466
||| .||||||||.||.||..||||||.||.||.||||||||.||.|
BPUM_1388___y 418 ATT----CATGTAGAGGATGAACAAAATTCATACCGCTTTGAATTCTCAG 463
BSNT_02483___ 467 AAGAGGATATCAATACAAGACCGACTGTAAAGGTAGGA--AAGATG--TA 512
||||.|||||.|||||||||||.||.||.||.|| ||| |.|||| ||
BPUM_1388___y 464 AAGATGATATGAATACAAGACCCACCGTGAAAGT-GGACGATGATGTATA 512
BSNT_02483___ 513 TGTCCAGCTGTATATGGACAAATTTGAGGGGAAG----CTATCCAGCATC 558
|||.|||||.||.|||||.||.||||| ||| ||.||.||.||.
BPUM_1388___y 513 TGTTCAGCTTTACATGGATAAGTTTGA----AAGCACCCTTTCTAGTATT 558
BSNT_02483___ 559 AGGGCGTTTGATGCGCAG--ACCTTTGTAAAGCAAAGACCTTATGAGGTA 606
|||||||||.| ||||| ||.|||||.||.||||..||.||.||.||.
BPUM_1388___y 559 AGGGCGTTTAA--CGCAGATACATTTGTGAAACAAAAGCCATACGAAGTC 606
BSNT_02483___ 607 GTGTACCGCGGGGAATTAATTAAACCGAAAGCCGTTTCAGATGAGAAATG 656
||.||.||.||..||||.||..||||..|.||..|.||||.|||.|||||
BPUM_1388___y 607 GTCTATCGAGGTCAATTGATAGAACCAGAGGCAATATCAGGTGAAAAATG 656
BSNT_02483___ 657 GAAAAAGATCCAAACAACGAGCGAAAAGCAAATCCTTGATTTGACGAATG 706
||||.|||||.||.|..|.||..||||.|||||..|||||.||||.|||.
BPUM_1388___y 657 GAAAGAGATCGAAGCGTCCAGTCAAAAACAAATTTTTGATATGACCAATA 706
BSNT_02483___ 707 TCATACGCGTTAAACACGGACTTGCGAAGCTT-GAGTGGGATCAGCCAAC 755
|.||.||...||||.|...|| |||..|.||| .|.||||||.|...|||
BPUM_1388___y 707 TTATTCGTCATAAATATAAAC-TGCCGATCTTAAACTGGGATGATGAAAC 755
BSNT_02483___ 756 GGCGGAAGTGGCATT--TGGACATAGTGAGGATATGAAGGAAAATAATTA 803
..|.||||||||||| || |||||||||||.|||||.||.|||.||||
BPUM_1388___y 756 CTCTGAAGTGGCATTCATG--CATAGTGAGGACATGAAAGAGAATCATTA 803
BSNT_02483___ 804 TTTCTCCCATGTCTCTAAAAAATACGGCTCGCTGAAAGACCGCTTAGAAG 853
|||||||||||..||.|||||||||||..|||||||||||||.||||||.
BPUM_1388___y 804 TTTCTCCCATGAATCGAAAAAATACGGTACGCTGAAAGACCGATTAGAAA 853
BSNT_02483___ 854 AAGGGCATGTTGACTTTCAGCAAGCGGGAGAAAATATCGCATACAATTAT 903
.|||..|.||.|..|||||||..||.||.|||||.||.||.||.||||||
BPUM_1388___y 854 GAGGCGAGGTGGCATTTCAGCTCGCAGGTGAAAACATTGCCTATAATTAT 903
BSNT_02483___ 904 GTGGACGGTCCGGCTGCTGTAGAAGGCTGGCTGAATAGCGAAGGCCATCG 953
||.||.||.||.||.||.||||||||||||||.|||||.|||||.|||.|
BPUM_1388___y 904 GTAGATGGACCTGCAGCGGTAGAAGGCTGGCTCAATAGTGAAGGTCATAG 953
BSNT_02483___ 954 AAAAGCGCTTCTGAATTCAGATTATACGCATCTTGGTGTCGGAGT---AG 1000
.||.|||.|..|.|||..||||||.||.||||||||.|||||.|| ||
BPUM_1388___y 954 GAAGGCGTTATTAAATAAAGATTACACACATCTTGGCGTCGGTGTGAAAG 1003
BSNT_02483___ 1001 ACCGGAAATATTACACCCAAAATTTTAT----TAAGCGATGGTAA 1041
| .|||||.|||||||||||.||.|| .||.| ||..|||
BPUM_1388___y 1004 A---AAAATACTACACCCAAAACTTCATCAAAAAAAC-ATCTTAA 1044
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