Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02486 and BPUM_1390

See Amino acid alignment / Visit BSNT_02486 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:58
# Commandline: needle
#    -asequence dna-align/BSNT_02486___ylbE.1.24716.seq
#    -bsequence dna-align/BPUM_1390___ylbE.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02486___ylbE-BPUM_1390___ylbE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02486___ylbE-BPUM_1390___ylbE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02486___ylbE
# 2: BPUM_1390___ylbE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 264
# Identity:     174/264 (65.9%)
# Similarity:   174/264 (65.9%)
# Gaps:          39/264 (14.8%)
# Score: 563.0
# 
#
#=======================================

BSNT_02486___      1 ATGCGCAAAGAGGTTCAGGAATATATTTTAGCAAACGAAGAACGGAAACG     50
                     .||||.|||||.||.|||||.|.|.|..|.||   ||||||   |.||||
BPUM_1390___y      1 GTGCGGAAAGACGTACAGGAGTTTGTCATGGC---CGAAGA---GGAACG     44

BSNT_02486___     51 ------ATTCATCAGAGAACAGCCGATATGGTACCGCAGAC--TT---TC     89
                           ||||||||||.|.|..||..|.|||||   .||||  ||   ||
BPUM_1390___y     45 AATCAAATTCATCAGACAGCGTCCTCTCTGGTA---TAGACAGTTGACTC     91

BSNT_02486___     90 AAGAAAACCGGATGATCTGTCCTCCTTTCAGCTTGAAATGATGAATTTTT    139
                       ||.|.||.|||.|.||.||.||||||.|..|.||.|..||||||||||
BPUM_1390___y     92 --GACATCCTGATAAGCTATCGTCCTTTGAATTAGATAAAATGAATTTTT    139

BSNT_02486___    140 ATGAAAAAACCATTCCGCATCGGGTGAACCAGTTTACGAACGGGATTCAA    189
                     |.||||||||||||||.|||||.||||..|||||.|..|||.|..|.|||
BPUM_1390___y    140 ACGAAAAAACCATTCCTCATCGTGTGAGTCAGTTGAGTAACAGTGTCCAA    189

BSNT_02486___    190 ATGGCGCAAATGATGATGCAAATGTTTCAAGCGATGCGGA--CAAAA---    234
                     |||||..||||||||||.||||||||.|||||.|||||.|  |||||   
BPUM_1390___y    190 ATGGCTGAAATGATGATTCAAATGTTCCAAGCAATGCGCAATCAAAATGG    239

BSNT_02486___    235 --------GATTAA    240
                             ||    
BPUM_1390___y    240 AGCCGGGTGA----    249


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