Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02496 and BPUM_1399
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:59
# Commandline: needle
# -asequence dna-align/BSNT_02496___ylbM.1.24716.seq
# -bsequence dna-align/BPUM_1399___ylbM.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02496___ylbM-BPUM_1399___ylbM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02496___ylbM-BPUM_1399___ylbM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02496___ylbM
# 2: BPUM_1399___ylbM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1353
# Identity: 836/1353 (61.8%)
# Similarity: 836/1353 (61.8%)
# Gaps: 213/1353 (15.7%)
# Score: 2154.5
#
#
#=======================================
BSNT_02496___ 1 ATGAAAGCTGTCGGATTGGTGGTTGAATATAATCCCTTTCATAACGGTC- 49
.|||||||....|||.|.||.||.||.||||||||.||||||.|.||.|
BPUM_1399___y 1 TTGAAAGCAACAGGAGTCGTTGTCGAGTATAATCCATTTCATTATGGACA 50
BSNT_02496___ 50 -----ACC---TTTATCATGCCCAAACAGCAAAGCGGCAAAC-----CGG 86
||| ||..|||.||..|||.| ||.|| |.|
BPUM_1399___y 51 TGCCTACCATGTTCGTCAGGCGAAAATA---------CATACCTCCTCAG 91
BSNT_02496___ 87 ATG-TGACACGGCTGTCGCGGTCATGAGCGGGCATTT--TT--TACAGCG 131
||| ||.|| |.||.||||||||||| || || |.|||||
BPUM_1399___y 92 ATGTTGCCA------TTGCCGTCATGAGCGG----TTCCTTCCTCCAGCG 131
BSNT_02496___ 132 TGGGGAACCGGCTGTTGTGTCAAAATGGGCCCGAACAAAAATGGCGCTGC 181
|||.||.||.||..|.||.|||||.|||||.||||||||||||||.||.|
BPUM_1399___y 132 TGGTGAGCCTGCCATCGTCTCAAAGTGGGCGCGAACAAAAATGGCACTAC 181
BSNT_02496___ 182 AAAGCGGAGTTGATCTTGTTATTGAGCTGCCTTATCTTTATGCCGTGCAA 231
|||.|||.||.||..||||...||||||.||.||..|.||.||.||||||
BPUM_1399___y 182 AAAACGGTGTAGACATTGTGTGTGAGCTTCCATACATATACGCAGTGCAA 231
BSNT_02496___ 232 AAAGCAGACATTTTTGCACGCGGCAGTGTTTCCATCCTGAACGAACTT-- 279
||.|||||.|..||.|||..|||...|||..|.||.||..|.| |||
BPUM_1399___y 232 AAGGCAGAAACCTTCGCAAACGGTGCTGTGGCGATTCTAGATG--CTTTA 279
BSNT_02496___ 280 GAATGTAAGGCGCTGTTTTTCGGGAGTGAAAATGGGGATATC-AAGCCGT 328
.||||..|..|.||.||||||||.||.||..||||.||.||| |||||
BPUM_1399___y 280 AAATGCCACTCCCTTTTTTTCGGCAGCGAGGATGGTGACATCAAAGCC-- 327
BSNT_02496___ 329 TTTTAG-AAACAGCACA-GCTTATTGG--TGAGCATAAA-CATACATTTG 373
|||.|| .|||.||.|| || |||| ||||.|.||| .|.|.||
BPUM_1399___y 328 TTTGAGCGAACGGCTCATGC---TTGGCATGAGAAAAAAGAAGAAAT--- 371
BSNT_02496___ 374 ATGACCGAATT------AAAGAAGAACTTAAAACGGGGACGAGTTACCCA 417
||||| || ||||||.||.|.||||..||....|||||.|||
BPUM_1399___y 372 -TGACC---TTTTCACAAAAGAAAAAGTGAAAAAAGGCCTTAGTTATCCA 417
BSNT_02496___ 418 ---GCAGCGGCGGCTAGCGCCTTCA------GCTCCATTTTGCATACCGA 458
|||||.||.||| ||| .|||| |.|..|| ||.|
BPUM_1399___y 418 ACTGCAGCAGCTGCT-GCG-TTTCAAGAGGTGATTGAT--------CCTA 457
BSNT_02496___ 459 AAGTGCACTTGACT-----TGTCAAAACCAAATAACATTTTGGGGTACCA 503
| |||||| ||| ||||....||.|||||.|||||.||.|.|||
BPUM_1399___y 458 A---GCACTT-ACTTGATCTGTCTTTGCCCAATAATATTTTAGGTTTCCA 503
BSNT_02496___ 504 GTATGT----GACTTCGGTTCTAACCGGGGGATACCCT---ATGAAACCT 546
.||||| |.|.|| |..|.|.|||.|||| |||.|.||.
BPUM_1399___y 504 TTATGTCAAAGCCATC-------ATGGAGAGATCCCCTCACATGCAGCCC 546
BSNT_02496___ 547 TATACCACGGCACGCATCTCTTCGGACTATCATGATGCCGATCTCCCTG- 595
|.||||.|...|.|.||.||.||.|..||||||||||..||.||.||||
BPUM_1399___y 547 TTTACCTCTCAAAGGATTTCATCTGGTTATCATGATGAAGAACTACCTGA 596
BSNT_02496___ 596 AAGGCGAAAACCACATTGCAAGCGCCACAAGCATCAGAAAAGCGATGACT 645
||..|.|||| ||.||||||||.|||||.||..||||||||.|.|
BPUM_1399___y 597 AAATCAAAAA----ATCGCAAGCGCAACAAGTATACGAAAAGCGTTAA-- 640
BSNT_02496___ 646 GGCCAGAATC---------TCGAAGC--CTGCCTTCGTTTTCTCCCTGCT 684
|..||| |.|||.| .||| ||.||.||||||.|..
BPUM_1399___y 641 ----AAGATCATGGTACATTTGAAACAGTTGC--TCCTTATCTCCCAGAG 684
BSNT_02496___ 685 GCATCTGCACGTG-AATTAGCAGCTTACCGCAAATCTTTCGGATTGTGG- 732
|| |..||.|..| ||||| || |.|| .|||.|||....|.|||
BPUM_1399___y 685 GC-TACGCTCAAGCAATTA-CA--TGAC----TATCATTCTTCATATGGT 726
BSNT_02496___ 733 ------CATACACCTGAGAG-CTACTT-TTCTTACTTAAAATACAGCCTT 774
|||||||..|| || |||||| ..||| |||||||.|| |..||
BPUM_1399___y 727 CTTCTACATACACAAGA-AGCCTACTTCAGCTT-CTTAAAACAC-GTTTT 773
BSNT_02496___ 775 TCA---ACTGTA-ACGGCACAGGAATTACA--GCAAGTATACGAGGTGGA 818
||| |.||.| |.|||| |||.||.| ||| |.||.||..|.||
BPUM_1399___y 774 TCACACAATGGATATGGCA---GAACTAGAAGGCA--TCTATGAAATCGA 818
BSNT_02496___ 819 GGAAGGTTTAGAGCACAGAATTCTTCGTTCGATCAGAAA---ATCCAGCT 865
.|||||..|.||.|||.|.||.|......||||.|.|.| ||| ||
BPUM_1399___y 819 AGAAGGCATCGAACACCGCATGCAAAAAGCGATTACACATGCATC---CT 865
BSNT_02496___ 866 CCTATCAGGAATTTATGGAGCTGCTGAAAACAAAACGCTATACGTGGACA 915
||||..||||||.|.|....||..||||||||||||||||||||||||||
BPUM_1399___y 866 CCTACGAGGAATATCTATCACTTGTGAAAACAAAACGCTATACGTGGACA 915
BSNT_02496___ 916 AGGCTCCAGCGGATGAATACACACATTTTAACCAGAACAA----AAAAAC 961
|||.|.|||||||||||.||||||.|.||||..|| ||.||.
BPUM_1399___y 916 AGGTTGCAGCGGATGAACACACACCTCTTAATGAG-----GGTGAAGAAG 960
BSNT_02496___ 962 AG-GATATGCAAAAGCTGCTTGACA-ACGATAAGGCGCCGTATATCAGGC 1009
|| |..|||||..||||| ||||.| |..|.||.||.||.||.||..||.
BPUM_1399___y 961 AGTGCCATGCATGAGCTG-TTGAAAGAGAAAAAAGCACCTTACATTCGGT 1009
BSNT_02496___ 1010 TTCTCGGCATGACAAAAAAAGGACAGGCTTATTTATC-CGAAAAGAAAAA 1058
|.||.||.|||.||||.|||||.|||...||.||||| || ...||||||
BPUM_1399___y 1010 TGCTTGGTATGTCAAAGAAAGGGCAGCAATACTTATCTCG-TGTGAAAAA 1058
BSNT_02496___ 1059 AGCACTGTCTGTTCCGCTTGTCAGCAAACTGTCCTCTTTCTCCCATCCAG 1108
||...||...||.|||||.|||||.||||||||..|.||.||.|||||.|
BPUM_1399___y 1059 AGATTTGGACGTGCCGCTCGTCAGTAAACTGTCTGCCTTTTCACATCCCG 1108
BSNT_02496___ 1109 CTCTCGATCTGG----ACGTAAAAGCAAGCAGGATTTACAGCCT-GCCGA 1153
|.||.|||||.| |||| |||..|.|..|.|.|||||| .|||.
BPUM_1399___y 1109 CACTTGATCTTGATATACGT----GCATCCCGCGTCTTCAGCCTACCCGT 1154
BSNT_02496___ 1154 TAGAAGAGCCGCTGAGAACTGAGTTTGACCTGCAGGAATACGG------- 1196
||| .|||||..||..||| ||..||.|| |||| .|||
BPUM_1399___y 1155 TAG-TGAGCCAGTGCAAAC-GAACTTAAC-----GGAA-GCGGAATTTAA 1196
BSNT_02496___ 1197 -ACATGCACCGATTCGATATGATGAAGATGAACAACACTTTTTAAATGTA 1245
|||| |||||||.|||||||||||||| |||....||.||..|.|.|
BPUM_1399___y 1197 AACAT-CACCGATCCGATATGATGAAGA--AACTGGTCTCTTCCAGTCT- 1242
BSNT_02496___ 1246 TAG 1248
|||
BPUM_1399___y 1243 TAG 1245
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