Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_02500 and BPUM_1402

See Amino acid alignment / Visit BSNT_02500 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:59
# Commandline: needle
#    -asequence dna-align/BSNT_02500___ylbO.1.24716.seq
#    -bsequence dna-align/BPUM_1402___gerR.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02500___ylbO-BPUM_1402___gerR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02500___ylbO-BPUM_1402___gerR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02500___ylbO
# 2: BPUM_1402___gerR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 616
# Identity:     397/616 (64.4%)
# Similarity:   397/616 (64.4%)
# Gaps:         110/616 (17.9%)
# Score: 1221.5
# 
#
#=======================================

BSNT_02500___      1 TTGACCATTACAAGACAAGATGCTTGGACTCAGGATGAGGATTTGCTGCT     50
                     |||||.||||||||.||.||.||.|||||.||||||||.|||||.||..|
BPUM_1402___g      1 TTGACGATTACAAGGCAGGACGCATGGACACAGGATGAAGATTTACTTTT     50

BSNT_02500___     51 GGCAGAAGTGGTGCTT-CGTCATATTCGAGAGGGAGGAACACAGCTTTCA     99
                     .||||||||.|| ||| .|.||.||||||||.||||||||.||||||||.
BPUM_1402___g     51 AGCAGAAGTCGT-CTTAAGGCACATTCGAGATGGAGGAACGCAGCTTTCC     99

BSNT_02500___    100 GCCTTTGAGGAGGTTGGGAGGGCGCTGACCAGAACCGCGGCAGCCTGTGG    149
                     ||.||||||||.|||||.|.|||..||.|.||||||||||||||.||.||
BPUM_1402___g    100 GCATTTGAGGAAGTTGGTAAGGCATTGTCAAGAACCGCGGCAGCATGCGG    149

BSNT_02500___    150 TTTCAGGTGGAACTCGTATGTGAGAAAACAATACCAGTCAGGTATAGAGC    199
                     ||||||||||||.||.||.||||||||||||||.|||.||||.|||||.|
BPUM_1402___g    150 TTTCAGGTGGAATTCATACGTGAGAAAACAATATCAGGCAGGCATAGAAC    199

BSNT_02500___    200 TTGCAAAAAAGCAAAGGAAAGAACTGAGAAAGCAAATCGGCGTTCATTC-    248
                     |.||||||||.||..||||||||.||.|.||..||||.||..||||||| 
BPUM_1402___g    200 TGGCAAAAAAACAGCGGAAAGAATTGCGTAAAAAAATAGGGATTCATTCC    249

BSNT_02500___    249 ---GGT------CAATATGCCGAATT--CCAT-GAAGCAGACTGCCTCAG    286
                        |||      |||.||||   .||  |||| |||| |||       ||
BPUM_1402___g    250 TCTGGTTTACCACAACATGC---GTTAACCATAGAAG-AGA-------AG    288

BSNT_02500___    287 -CATCGTCAGAAGGAAAACG----AGATTTGTCCATTCAGGATGTCATTC    331
                      ||||.||       |||||    |||.|||.||.|||..||.||.||||
BPUM_1402___g    289 ACATCTTC-------AAACGAGGCAGAATTGACCCTTCGAGAAGTGATTC    331

BSNT_02500___    332 AATTTCTCGAACA-ATTCAAAGAAGCACCGT-------CTGCACAAGAAT    373
                     |.|||.|.||.|| .||.||| |||.||| |       ||||.|    ||
BPUM_1402___g    332 AGTTTTTAGAGCAGCTTGAAA-AAGAACC-TGATGGACCTGCTC----AT    375

BSNT_02500___    374 TTCAGCTTGAAAGGGAAAAATTGAAGGAGCAAATCCAATCGCTGCAAAAA    423
                     ||        |.|.|||.||.||     |||.||.||    |.|||..||
BPUM_1402___g    376 TT--------ACGCGAAGAACTG-----GCAGATGCA----CAGCATCAA    408

BSNT_02500___    424 GAGCTTGAGG--ATTTGCGGAGTGAAAATCAGACATT----GCGG-AATC    466
                         ||.|.|  |.||.|||| .||||||.| |||.|    |||| ||| 
BPUM_1402___g    409 ----TTAAAGTCACTTACGGA-AGAAAATGA-ACACTTAAAGCGGCAAT-    451

BSNT_02500___    467 AGCTAGAGATGACAGAAGAGGATTACAAGGCACTGATCGATATCATGGAT    516
                        ||.|.|||||||||||.||||||..||||||.||...||||.|.||.
BPUM_1402___g    452 ---TAAAAATGACAGAAGAAGATTACCGGGCACTCATAAGTATCGTTGAA    498

BSNT_02500___    517 CGGGCCAGAAAAATGGTTGTTTCGAAGGAAGACGGAAGAATGAAAAAAAC    566
                     .|.|.||.|.|                |||.|  .|||..|.|||.||..
BPUM_1402___g    499 AGAGTCAAACA----------------GAATA--TAAGCTTAAAAGAATA    530

BSNT_02500___    567 GGCTCAAGAAACGTAA    582
                     .|||.||.||      
BPUM_1402___g    531 TGCTAAATAA------    540


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.