Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02509 and BPUM_1410

See Amino acid alignment / Visit BSNT_02509 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:01
# Commandline: needle
#    -asequence dna-align/BSNT_02509___spoVD.1.24716.seq
#    -bsequence dna-align/BPUM_1410___spoVD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02509___spoVD-BPUM_1410___spoVD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02509___spoVD-BPUM_1410___spoVD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02509___spoVD
# 2: BPUM_1410___spoVD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1972
# Identity:    1438/1972 (72.9%)
# Similarity:  1438/1972 (72.9%)
# Gaps:          83/1972 ( 4.2%)
# Score: 5124.5
# 
#
#=======================================

BSNT_02509___      1 TTGCGCGTCTCGAATGTAACGGTTAGAAAACGTTTATTATTTGTTTTGCT     50
                     .||||.||.||||.||||||.||.||||||||.||..|.||.||..||||
BPUM_1410___s      1 GTGCGAGTGTCGAGTGTAACAGTGAGAAAACGATTGCTTTTCGTGCTGCT     50

BSNT_02509___     51 TTTTGGCGTGATCGTGTTTCTGATCATTGATACAAGGCTGGGGTATGTTC    100
                     .|||||.||||||.|.|||.|.|||||.|||||.||..|.||.|||||.|
BPUM_1410___s     51 GTTTGGGGTGATCATTTTTTTCATCATAGATACTAGATTAGGATATGTGC    100

BSNT_02509___    101 AGTTTGTGATGGGCGAAAAACTGACTTCGC-TAGCGAAAGATTCCTGGAG    149
                     |||||.|.||||||||.||.||||| ..|| ||||.||||||||.|||||
BPUM_1410___s    101 AGTTTATTATGGGCGAGAAGCTGAC-AAGCTTAGCAAAAGATTCATGGAG    149

BSNT_02509___    150 CCGGAACTTGCCGTTTGAGCCGGAGAGAGGCGAGATTCTGGATCGGAATG    199
                     ..|.|||.|.||.||.||.|||||..||||.||.||..||||.|||||||
BPUM_1410___s    150 TAGAAACCTTCCATTCGAACCGGAACGAGGAGATATCTTGGACCGGAATG    199

BSNT_02509___    200 GTGTGAAGCTCGCAACAAATAAAAGTGCGCCGACCGTATTCGTCGTGCCG    249
                     |.||..||||.||.||.||.||||||||.||..|..|.||.||.||.||.
BPUM_1410___s    200 GAGTAGAGCTTGCGACGAACAAAAGTGCTCCATCTATTTTAGTTGTCCCT    249

BSNT_02509___    250 CGCCAAGTTCAGAATCCGATG--AAAACGAGCAAGCAGCTTGCGGCGGTG    297
                     ||.|||.||.|..||||  ||  .||||.||.|||.|..|.||.||.|||
BPUM_1410___s    250 CGGCAAATTAAAGATCC--TGCAGAAACAAGTAAGAAATTAGCAGCAGTG    297

BSNT_02509___    298 CTCAATATGTCAGAAGAAAAAGTATATAAACATGTGACTAAAAAAGCGTC    347
                     ||.||||||||.|||||.||||..||.|||||.||.||.||.|||.|.||
BPUM_1410___s    298 CTGAATATGTCTGAAGAGAAAGCGTACAAACACGTCACGAAGAAAACATC    347

BSNT_02509___    348 AATCGAA--AAGATCACTCCTGAAGGGAGAAAAATTTCAAATGAGAAGGC    395
                     |||.|||  ||..|||  |||||.||.|||||..|.|||.||||.||.||
BPUM_1410___s    348 AATAGAACGAATTTCA--CCTGAGGGCAGAAAGGTATCACATGAAAAAGC    395

BSNT_02509___    396 GAAGGAAATTAAAGCGCTTGATTTAAAAGGTGTGTATGTTGCGGAGGACA    445
                     .||.|||.|.|.||.||||||||||.|||||||||||||.||.||.||||
BPUM_1410___s    396 AAAAGAAGTGAGAGAGCTTGATTTAGAAGGTGTGTATGTAGCAGAAGACA    445

BSNT_02509___    446 GTATCCGTCATTACCCGTTCGGCAGCTTTTTATCTCATGTGCTTGGATTT    495
                     |.|||.|.|||||.|||||.|||||||||.|.||.|||||.|||||.|||
BPUM_1410___s    446 GCATCAGACATTATCCGTTTGGCAGCTTTCTTTCACATGTACTTGGTTTT    495

BSNT_02509___    496 GCAGGAATTGACAACCAAGGACTCCTTGGATTGGAAGCCTATTACGACGA    545
                     ||.||.||.||.||.|||||..|.||.||..|.||||||||.||.||.||
BPUM_1410___s    496 GCTGGCATCGATAATCAAGGCTTACTAGGGCTTGAAGCCTACTATGATGA    545

BSNT_02509___    546 TGATTTAAAAGGGGAAAAAGGTTCTGTCAAGTTTTATACAGATGCCAAGG    595
                     .||..|||||||.||||||||.|||||.||.||||||.|.|||||.||.|
BPUM_1410___s    546 CGACCTAAAAGGTGAAAAAGGCTCTGTGAAATTTTATTCTGATGCAAAAG    595

BSNT_02509___    596 GTAAAAAAATGCCTGATGAAGCGGATGACTATACGCCGCCTAAGGATGGG    645
                     |..||||||||||.||||||||.|||||.|||||.||.|||||.|||||.
BPUM_1410___s    596 GGCAAAAAATGCCAGATGAAGCAGATGATTATACACCCCCTAAAGATGGT    645

BSNT_02509___    646 CTTGATATGAAGCTGACGGTTGATTCAAAGGTCCAGACGATAATGGAAAG    695
                     |||||||||||..||||.||.|||.||||.||.||.||.||.||.|||.|
BPUM_1410___s    646 CTTGATATGAAATTGACAGTCGATGCAAAAGTACAAACTATCATAGAACG    695

BSNT_02509___    696 AGAGCTTGATAACGCTGAGGCCAAATATCATCCGGACGGCATGATTGCCG    745
                     .||..|.||.|||||..||||.||.|||.||||.||.||.||||||||..
BPUM_1410___s    696 GGAATTAGACAACGCGCAGGCAAAGTATAATCCTGATGGTATGATTGCGA    745

BSNT_02509___    746 TAGCCATGAATCCGAAAAACGGAGAAATTTTGGGGATGTCTAGCAGGCCT    795
                     |.||.||||||||||||||.||.|||.|..|.||.|||||.|||||.||.
BPUM_1410___s    746 TTGCGATGAATCCGAAAAATGGTGAAGTGCTCGGAATGTCGAGCAGACCA    795

BSNT_02509___    796 GACTTCGACCCTGCTGATTACCAATCTGTTGATCCGTCCGTCTACAATCG    845
                     ||.||.||.||.||||||||.|||||.||||||.|....||.|.|||.||
BPUM_1410___s    796 GATTTTGATCCAGCTGATTATCAATCAGTTGATTCAAAAGTGTTCAACCG    845

BSNT_02509___    846 AAACCTGCCAGTATGGAGCACGTATGAACCGGGATCTACCTTTAAAATTA    895
                     |||.||.||.||.||||||||.|||||.|||||.||.||.||||||||||
BPUM_1410___s    846 AAATCTACCGGTGTGGAGCACATATGAGCCGGGTTCAACATTTAAAATTA    895

BSNT_02509___    896 TTACACTTGCAGCAGCCCTTGAAGAGCAAAAAGTAAATTTGAAACGGGAT    945
                     ||||||||||||||||..|.||||||.|.|||||.|||||.|||||.|||
BPUM_1410___s    896 TTACACTTGCAGCAGCATTAGAAGAGAAGAAAGTTAATTTAAAACGTGAT    945

BSNT_02509___    946 CAATTTTATGATAAAGGGCATGCGGA--------AGTGGACGGAGCGAGA    987
                     ..|||||.|||.|        |||||        |||.||.||.||.||.
BPUM_1410___s    946 TCATTTTTTGACA--------GCGGATCTGTGACAGTTGATGGTGCAAGG    987

BSNT_02509___    988 CTGCGGTGCTGGAAAAGAGGCGGGCACGGGCTTCAGACGTATC-TGGAAG   1036
                     ||..|.||||||||||.||||||.|||||....|||.|.| || ||||||
BPUM_1410___s    988 CTTAGATGCTGGAAAAAAGGCGGACACGGATCGCAGTCAT-TCTTGGAAG   1036

BSNT_02509___   1037 TTGTGCAGAACTCCTGCAACCCGGGGTTTGTTGAATTAGGCGAGCGCTTA   1086
                     |.||.||.||.|||||.|||||.||.|||||.||..|.||.||.||..|.
BPUM_1410___s   1037 TCGTTCAAAATTCCTGTAACCCCGGCTTTGTAGAGCTGGGAGACCGTCTG   1086

BSNT_02509___   1087 GGAAAGGAAAA--GCTTTTCAAATATATCAAAGACTTTGGTTTTGGACAA   1134
                     ||.||.|||||  ..|||||  .|||||||||.|.||.||.|||||.|||
BPUM_1410___s   1087 GGTAAAGAAAAATTATTTTC--TTATATCAAAAATTTCGGATTTGGCCAA   1134

BSNT_02509___   1135 AAAACGGGGATTGATCTCCAAGGCGAGGGAACAGGCATCTTATTCCCGCT   1184
                     |||||.||.|||||.||.|||||.||.||....||.||.||.||||||||
BPUM_1410___s   1135 AAAACCGGAATTGACCTTCAAGGAGAAGGGCGTGGGATTTTGTTCCCGCT   1184

BSNT_02509___   1185 TGAGAGAGTGGGCCCGGTGGAGCAAGCAACTACGGCTTTCGGACAGGGAG   1234
                     |||..|.||.||.||.||.|||||.||.||.|||||.||.||.||.||.|
BPUM_1410___s   1185 TGATCGTGTAGGTCCTGTAGAGCAGGCGACCACGGCCTTTGGTCAAGGTG   1234

BSNT_02509___   1235 TATCCGTCACGCCGATTCAGCAAGTTGCAGCAGTATCCGCCGCTGTAAAC   1284
                     |.||.||.||.||||||||.|||||.||.||||||.|.||.||.|||||.
BPUM_1410___s   1235 TTTCTGTTACACCGATTCAACAAGTGGCTGCAGTAGCAGCTGCAGTAAAT   1284

BSNT_02509___   1285 GGAGGAACGCTCTATACACCTTATATTGCAAAGGAATGGATCGATCCTGT   1334
                     ||.||.||.||.||.||.||.|||||||||||.||.|||||.|||||..|
BPUM_1410___s   1285 GGTGGGACACTTTACACGCCATATATTGCAAAAGAGTGGATAGATCCAAT   1334

BSNT_02509___   1335 TACGAAGAAAA-CGGTC---AAAAAACAATCACCAATCGCAAAGAAACAA   1380
                     .||    |||| .||||   |||||.|||||.||.||.||.||.||..||
BPUM_1410___s   1335 CAC----AAAAGAGGTCGTGAAAAAGCAATCGCCTATTGCCAAAAAGAAA   1380

BSNT_02509___   1381 GTCATTTCTGAGGAAACATCCAAACAAATCCGCTATGCTCTAGAAAGCGT   1430
                     ||.|||||.|..||||||||.|||.|||||.|.|||||.||.|||||.||
BPUM_1410___s   1381 GTGATTTCAGCAGAAACATCTAAAGAAATCAGGTATGCACTTGAAAGTGT   1430

BSNT_02509___   1431 CGTCGCAGAAGGAACCGGCCGCAATGCATTTGTAGAAGGATATCGTGTCG   1480
                     .|||||..|||||||.|||||.|||||||||||.|||||.|||||.||||
BPUM_1410___s   1431 AGTCGCCCAAGGAACTGGCCGAAATGCATTTGTTGAAGGGTATCGGGTCG   1480

BSNT_02509___   1481 GAGGAAAAACGGGAACTGCACAAAAGGTTAAAGATGGAAAATATCTTGAA   1530
                     |.||||||||.|||||.||.||.|||||.||.||.|||||.|||.|.||.
BPUM_1410___s   1481 GCGGAAAAACAGGAACAGCCCAGAAGGTAAAGGACGGAAAGTATATGGAG   1530

BSNT_02509___   1531 AACAACCATATTGTATCATTTATCGGTTTCGCGCCAGCTGATGATCCGAG   1580
                     ||.|||||||||||.||.|||||||||||.|||||.||.|||||.||.||
BPUM_1410___s   1531 AATAACCATATTGTGTCGTTTATCGGTTTTGCGCCTGCCGATGACCCAAG   1580

BSNT_02509___   1581 TCTAGTCGTCTACGTTGCGGTGGATAACCCGAAAGGCACGATTCAGTTTG   1630
                     |.|.||.|||||.||.||.|||||||||||.||||||||.|||||.||||
BPUM_1410___s   1581 TATCGTAGTCTATGTGGCTGTGGATAACCCAAAAGGCACCATTCAATTTG   1630

BSNT_02509___   1631 GCGGAACGGTGGCAGCGCCTATTGTCGGAAATATTATGAGAGACAGTCTG   1680
                     |.||.||.||.||.|||||.|||||.||..||||||||.|.||.||.|||
BPUM_1410___s   1631 GTGGTACCGTTGCCGCGCCAATTGTTGGTCATATTATGCGGGATAGCCTG   1680

BSNT_02509___   1681 CCGGAACTTGGTGTGAAGCTCCGGAAAAA-------TCAAATCGAGAAAA   1723
                     ||.||..|.||||||||       |||||       .|||||.||.||.|
BPUM_1410___s   1681 CCTGAGATGGGTGTGAA-------AAAAAGAAAAGGCCAAATTGAAAAGA   1723

BSNT_02509___   1724 AATACCAATGGAACGACACAAAAACAATAGAAGTTCCGAATGTTGTAG--   1771
                     |.||.||.|||...|||||||||||.||.|||||.||||||.||||||  
BPUM_1410___s   1724 AGTATCAGTGGCTGGACACAAAAACCATTGAAGTACCGAATCTTGTAGGA   1773

BSNT_02509___   1772 GGATGTCTGTCTCAGATCTTGAGTCACTATTGGTGAATCTCAATG-TGGA   1820
                     |||  |||||.|||||||||||.||.||.|||.|.|| ||.||.| |.||
BPUM_1410___s   1774 GGA--TCTGTTTCAGATCTTGAATCCCTCTTGATTAA-CTTAAAGATCGA   1820

BSNT_02509___   1821 TGCTTCCGGGAAAGGGAGCAAAATCGTTAAACAATCGCCAGCTGCCGGAA   1870
                     |||.||.||.|..||.||.||..|.||.||.|||||.||.|||||.||.|
BPUM_1410___s   1821 TGCCTCAGGAACTGGCAGTAAGGTAGTGAAGCAATCACCTGCTGCGGGGA   1870

BSNT_02509___   1871 CGAAAGTAAAAGAAGGCTCAAAGATACGCGTGTATTTGACTGAAGAAGAT   1920
                     |.||.||.|||||||||||.|.|||..|     |||..|||.|| |.|||
BPUM_1410___s   1871 CAAAGGTCAAAGAAGGCTCGACGATCAG-----ATTATACTTAA-ACGAT   1914

BSNT_02509___   1921 GAA-AAGGAGGCAGCCGATTGA   1941
                     ||| ||                
BPUM_1410___s   1915 GAATAA----------------   1920


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