Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02513 and BPUM_1413

See Amino acid alignment / Visit BSNT_02513 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:01
# Commandline: needle
#    -asequence dna-align/BSNT_02513___murD.1.24716.seq
#    -bsequence dna-align/BPUM_1413___murD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02513___murD-BPUM_1413___murD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02513___murD-BPUM_1413___murD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02513___murD
# 2: BPUM_1413___murD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1428
# Identity:     984/1428 (68.9%)
# Similarity:   984/1428 (68.9%)
# Gaps:         144/1428 (10.1%)
# Score: 3268.5
# 
#
#=======================================

BSNT_02513___      1 GTGGAAAATGAT-CAATTTTTACAGAAAC-AGCATTTTTTAATCCTTGGG     48
                      |.|||.|.||| |||.|.||| |.|||| |.|||.|..||.|..|.||.
BPUM_1413___m      1 -TTGAATAAGATGCAAATGTTA-AAAAACGAACATGTACTAGTATTAGGT     48

BSNT_02513___     49 CTTGCGAAAAGCGGATATGCGGCGGCCTCCATTCTTCATGAAAAAGGCAT     98
                     |||||.|||||||||||||||||.||.||.||||||||||||.|.||..|
BPUM_1413___m     49 CTTGCTAAAAGCGGATATGCGGCAGCTTCAATTCTTCATGAACATGGAGT     98

BSNT_02513___     99 TTATGTTGCAGTCAATGACCAAAAGCCTTTTGAAGAAAATGAACCGGCAC    148
                     ..||||..|.||.|||||.|||||.||.||||||||.||.|||||.||.|
BPUM_1413___m     99 AAATGTGACGGTAAATGATCAAAAACCATTTGAAGAGAACGAACCTGCTC    148

BSNT_02513___    149 AAAAGCTTTCTGAAAAAGGAATCGAAGTTGTTTGCGG-AGAGCATCCAGT    197
                     |....|||||||||||.||.||.||.||.|||||.|| || .|||||..|
BPUM_1413___m    149 AGCTACTTTCTGAAAAGGGGATTGATGTCGTTTGTGGCAG-CCATCCTCT    197

BSNT_02513___    198 TTCTCTGTTCGATCAGCATCAA---ATCACGATTCTGATCAAAAACCCGG    244
                     |..|.|.|||||  || ||.||   ||.||.|||.|.||.|||||.||.|
BPUM_1413___m    198 TCGTATATTCGA--AG-ATAAAGACATTACAATTTTAATTAAAAATCCAG    244

BSNT_02513___    245 GAATTCCTTATGAAAATATTATGGTTCAGGAAGCG-------GAGAAAAG    287
                     |.|||||||||||||||.|.||||||||.||||||       |..||   
BPUM_1413___m    245 GTATTCCTTATGAAAATGTGATGGTTCAAGAAGCGCTTCGCCGTCAA---    291

BSNT_02513___    288 AGGTATTCCGGTTTGGACGGAAATTGAGCTCGC-------TTACTACCTG    330
                         |||||.||||||||.|||||.||..|.||       |||  |||| 
BPUM_1413___m    292 ----ATTCCAGTTTGGACTGAAATAGAATTAGCGTATCATTTA--ACCT-    334

BSNT_02513___    331 ACCAGCGCCAAGTTTATCGGGATTACCGGATCGAACGGTAAAACGACCAC    380
                       ||.|.||  .|||||.||||||||.||||||||.||.|||||.||.||
BPUM_1413___m    335 --CATCTCC--TTTTATTGGGATTACTGGATCGAATGGAAAAACCACTAC    380

BSNT_02513___    381 GACAACGCTAATTTACGAAATGCTCAAAGCTGACTCGCAAAAAGCACTGA    430
                     .||.||..|||||||.||||||||.|||...|||...||||||.||.|..
BPUM_1413___m    381 CACGACATTAATTTATGAAATGCTGAAAAAAGACAGCCAAAAAACATTAG    430

BSNT_02513___    431 TTGCCGGAAACATCGGCACAGTCGCAAGTGAGGTTGC--CTATCATGCTG    478
                     |.||.||.||.||.||.|||||.||.|||||.||.||  |.|  ||||.|
BPUM_1413___m    431 TGGCTGGTAATATTGGAACAGTTGCCAGTGAAGTCGCTGCAA--ATGCAG    478

BSNT_02513___    479 ATGGAGATGAATGGATCGTTACCGAACTGTCTTCGTTTCAGCTGATGGGA    528
                     ||||.|||||.||||||||.||.|||||.|||||.||||||.|.||||||
BPUM_1413___m    479 ATGGCGATGAGTGGATCGTAACGGAACTCTCTTCTTTTCAGTTAATGGGA    528

BSNT_02513___    529 ACACACGCTTTCAGACCGGAAATCAGCCTGATTTTAAATGTATTTGACGC    578
                     |||...|..||.||||||.||||||||.|.||.||||||.|.|||||.||
BPUM_1413___m    529 ACAGTTGAATTTAGACCGAAAATCAGCTTAATATTAAATATTTTTGATGC    578

BSNT_02513___    579 CCATCTGGATTATCACCATACGCGCGAAAACTATGAAAAAGCGAAACAGA    628
                     .|||.|.||.||||||||.||.||.|||.|.|||||||||||.||.||||
BPUM_1413___m    579 ACATTTAGACTATCACCACACTCGTGAAGAATATGAAAAAGCAAAGCAGA    628

BSNT_02513___    629 AAGTGTACCTTCATCAGACTGCTTCAGATAAAGCCAT--------TGTC-    669
                     ||||.|.|.|.|||||         |.||.|||  ||        |||| 
BPUM_1413___m    629 AAGTATTCGTACATCA---------ACATGAAG--ATGATATTGCTGTCA    667

BSNT_02513___    670 --AACCAGGATGATGAAACCGTC-GTGCGT----CTTGCTGAAGCCGGAA    712
                       |||...||||||    ||.|| || .||    ||.||.||||....||
BPUM_1413___m    668 TTAACTTAGATGAT----CCTTCAGT-TGTAAAACTAGCAGAAGGTTCAA    712

BSNT_02513___    713 AAGCCGAAATCGTCCCATTTTCAGT--------CAGCAAAAC-----GC-    748
                     ||||..|||..||....||.|||||        |||.|.|||     || 
BPUM_1413___m    713 AAGCAAAAAAAGTGTTTTTCTCAGTGAAAGAGCCAGTAGAACATGGTGCG    762

BSNT_02513___    749 ----TTGAACAGGGCGCATATGTA-------AAAG-ACAGTATGATT-AT    785
                         ||.||||.||.||| ||.||       ||.| ||| |||.||| ||
BPUM_1413___m    763 TTTATTCAACATGGTGCA-ATTTACTACATGAATGAACA-TATCATTGAT    810

BSNT_02513___    786 GTTTAACGGCGAAGCCATTCTTCCTCTGGAAGAGGTTGTGCTGCCCGGTG    835
                     ||         ||                |.||.|||||.||.||.||||
BPUM_1413___m    811 GT---------AA----------------AGGATGTTGTCCTTCCTGGTG    835

BSNT_02513___    836 CTCATAACCTGGAGAACATTTTAGCAGCTATTGCAGTTGTGAAAACGGCA    885
                     ..|||||||..||.||||||||.|||||||||...||||||||||..|||
BPUM_1413___m    836 AACATAACCAAGAAAACATTTTGGCAGCTATTTGTGTTGTGAAAAATGCA    885

BSNT_02513___    886 GG-AGCATCCAATGAGGC---GGTTAAAAAGGTGCTGACAAGCTTTACTG    931
                     || .|| ||.|||||.||   .|||   .|.||.||.||.|..|||..||
BPUM_1413___m    886 GGTTGC-TCAAATGATGCAATCGTT---CACGTTCTCACGACATTTGGTG    931

BSNT_02513___    932 GTGTGAAGCACCGCCTCCAATATGT---CACAACTGTGAATGGCCGCAAA    978
                     |.||||||||.||.||.||||.|||   .||||.|..||   |.||.|||
BPUM_1413___m    932 GAGTGAAGCATCGTCTGCAATTTGTAGATACAATTCAGA---GTCGGAAA    978

BSNT_02513___    979 TTTTATAACGACAGTAAAGCAACAAACATTCTGGCGACAAGCAAGGCGCT   1028
                     |||||||||||.|||||||||||.||.|||.||||.|||||.||.||..|
BPUM_1413___m    979 TTTTATAACGATAGTAAAGCAACCAATATTTTGGCAACAAGTAAAGCATT   1028

BSNT_02513___   1029 TTCAGCTTTTGATAAGCCGGTCATTCTGCTTGCGGGCGGACTGGATCGCG   1078
                     .||||||||.||..|.|||...|||.||.|.||.||.|||||.|||||.|
BPUM_1413___m   1029 GTCAGCTTTCGAACAACCGACTATTTTGTTAGCAGGTGGACTTGATCGAG   1078

BSNT_02513___   1079 GAAATGGTTTTGATGACTTGAAACCTTATATGAAGCATGTCAAAGCAGTG   1128
                     |.||||..||||||||.||||||||||.||||||.|||||.||||.|.||
BPUM_1413___m   1079 GCAATGAATTTGATGAATTGAAACCTTTTATGAAACATGTAAAAGGAATG   1128

BSNT_02513___   1129 CTTACATTTGGCCAGACGGCGCCAAAACTCGAGAAACTCGGCAATGAACT   1178
                     .|.||||||||..||||.||.||.||..|.|.|||.||.||..|.||.||
BPUM_1413___m   1129 ATCACATTTGGTGAGACTGCACCTAAGTTTGTGAAGCTTGGTGAAGAGCT   1178

BSNT_02513___   1179 GGGAATACAACATGTCAAACGTGTCGATAATGTTGAACAAGCAGTATCTG   1228
                     .||||||||.|||||.||||.|||||||||||||||||||||||||.|||
BPUM_1413___m   1179 TGGAATACATCATGTAAAACATGTCGATAATGTTGAACAAGCAGTACCTG   1228

BSNT_02513___   1229 CGGCGTTTGCGCTCTCAAATGAAGGAGATGTCATCCTGCTGTCACCCGCG   1278
                     ||||||||....|.||..|.||||.|||.||.||..|..|.||.||.||.
BPUM_1413___m   1229 CGGCGTTTAACATATCTGAAGAAGAAGACGTGATTTTATTATCTCCGGCT   1278

BSNT_02513___   1279 TGTGCGAGCTGGGATCAATTCAAAACATTTGAAGAACGCGGTGACATGTT   1328
                     |||||.||||||||||||...|||||||||||||||||.||.||||||||
BPUM_1413___m   1279 TGTGCAAGCTGGGATCAACATAAAACATTTGAAGAACGTGGAGACATGTT   1328

BSNT_02513___   1329 TATAGATGCCGTGCATATGCTTAAGTAA   1356
                     |.||.|.|||||||||||||||||.|||
BPUM_1413___m   1329 TGTAAACGCCGTGCATATGCTTAAATAA   1356


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