Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02514 and BPUM_1414

See Amino acid alignment / Visit BSNT_02514 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:01
# Commandline: needle
#    -asequence dna-align/BSNT_02514___spoVE.1.24716.seq
#    -bsequence dna-align/BPUM_1414___spoVE.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02514___spoVE-BPUM_1414___spoVE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02514___spoVE-BPUM_1414___spoVE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02514___spoVE
# 2: BPUM_1414___spoVE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1126
# Identity:     850/1126 (75.5%)
# Similarity:   850/1126 (75.5%)
# Gaps:          38/1126 ( 3.4%)
# Score: 3209.0
# 
#
#=======================================

BSNT_02514___      1 GTGTCGATTGCTTTGACTACTAAAAAAACATCGCCTGATTTGTTATTGGT     50
                                 |||||.|.|||.|||||.||.||.|||||.||..|.||
BPUM_1414___s      1 ------------TTGACGAATAAGAAAACTTCTCCGGATTTTTTGCTTGT     38

BSNT_02514___     51 CATCATTACGTTATTATTATTAACAATCGGATTAATTATGGTGTACAGTG    100
                     ..|||||||||||.|.|||||.||.||.||.|||||||||||||||||.|
BPUM_1414___s     39 TGTCATTACGTTACTTTTATTGACGATTGGTTTAATTATGGTGTACAGCG     88

BSNT_02514___    101 CGAGTGCGGTATGGGCGGAT--TATAAATTTGACGACTCATTCTTTTTCG    148
                     |.|||||.||.|||||  ||  |||||||||||.||.||.||.|.|||.|
BPUM_1414___s     89 CTAGTGCAGTGTGGGC--ATCGTATAAATTTGATGATTCGTTTTATTTTG    136

BSNT_02514___    149 CGAAACGGCAGCTTTTGTTTGCGGGAATCGGCGTCATTGCTATGTTTTTT    198
                     |.|||.|.|||||.||||||||.||||||||.||.||.||.||||||||.
BPUM_1414___s    137 CAAAAAGACAGCTGTTGTTTGCCGGAATCGGAGTTATCGCAATGTTTTTC    186

BSNT_02514___    199 ATCATGAATGTCGATTATTGGACTTGGAGGACATGGTCCAA-------AT    241
                     ||.|||...||||||||||||||.|||.||||.|||||.||       ||
BPUM_1414___s    187 ATTATGCGAGTCGATTATTGGACGTGGCGGACTTGGTCAAAGATATTGAT    236

BSNT_02514___    242 TGCTGATGGTTATCTGCTTTTTCCTTCTGGTGCTTGTTTTGATACCGGGC    291
                     |||||       |.||.|||.|||||.||.|||||||..|.||.||.|||
BPUM_1414___s    237 TGCTG-------TTTGTTTTCTCCTTTTGCTGCTTGTACTTATTCCTGGC    279

BSNT_02514___    292 GTCGGAATGGTGCGGAACGGTTCAAGAAGCTGGATCGGAGTCGGAGCATT    341
                     .||||.||||.|.|.||.||.|||||||||||||||||.|||||.||.||
BPUM_1414___s    280 ATCGGTATGGAGAGAAATGGATCAAGAAGCTGGATCGGTGTCGGTGCGTT    329

BSNT_02514___    342 CAGCATACAGCCTTCAGAGTTTATGAAGCTTGCGATGATTGCATTCCTTG    391
                     .||.||.|||||.||.||.|||||||||||||||||||||||.||.||||
BPUM_1414___s    330 TAGTATTCAGCCCTCTGAATTTATGAAGCTTGCGATGATTGCGTTTCTTG    379

BSNT_02514___    392 CTAAATTTCTCTCTGAAAAACAAAAAAACATCACATCGTT---CAGACGG    438
                     |.|||||..|.|||||||||||||||||.||||||||.||   ||.|   
BPUM_1414___s    380 CAAAATTCTTATCTGAAAAACAAAAAAATATCACATCCTTTCGCAAA---    426

BSNT_02514___    439 GGGTTCGTCCCTGCACTTGGCATCGTGTTTTCAGCATTTTTGATTATCAT    488
                     ||.||.|.|||.||..|.|||||.||.|||||.||||||...||.||.||
BPUM_1414___s    427 GGTTTTGCCCCAGCTTTAGGCATTGTATTTTCTGCATTTGCCATCATTAT    476

BSNT_02514___    489 GTGCCAGCCTGACCTCGGAACGGGGACAGTAATGGTCGGAACTTGTATTG    538
                     |...||.||.||.||.|||||.||.||.||||||||.|||||.||||||.
BPUM_1414___s    477 GCTTCAACCAGATCTGGGAACAGGAACGGTAATGGTTGGAACCTGTATTA    526

BSNT_02514___    539 TCATGATTTTTGTAGCCGGCGCGCGGATCGCCCATTTCGTCTTTCTCGGA    588
                     |||||||.|||||..|.||.|||.|.||.||.||.||..|.||||||||.
BPUM_1414___s    527 TCATGATATTTGTTTCAGGTGCGAGAATTGCTCACTTTATATTTCTCGGT    576

BSNT_02514___    589 CTGATCGGCCTCAGCGGATTTGTCGGGCTCGTACTATCAGCTCCATATCG    638
                     ||.||.||.||||||||.||||.||.|||.||..|||||||.||.||.||
BPUM_1414___s    577 CTTATAGGGCTCAGCGGGTTTGCCGCGCTTGTCTTATCAGCACCCTACCG    626

BSNT_02514___    639 GATTAAGCGGATTACCTCATACTTAAATCCATGGGAAGACCCGCTCGGAA    688
                     .||.||.||.|||||.||||||||||||||.||||||||.|||||.||.|
BPUM_1414___s    627 AATAAAACGAATTACATCATACTTAAATCCTTGGGAAGATCCGCTGGGCA    676

BSNT_02514___    689 GCGGATTTCAGATCATTCAATCGCTT-TATGCAGTGGGGCCCGGCGGGTT    737
                     |.||.|||||.||.|||||.|| ||| ||.||.||.||.||.||.||..|
BPUM_1414___s    677 GTGGGTTTCAAATTATTCAGTC-CTTATACGCTGTTGGTCCAGGTGGTCT    725

BSNT_02514___    738 GTTTGGAATGGGGCTCGGACAAAGCAGACAGAAATTCTTTTATCTGCCTG    787
                     |||.||||||||.||.||.|||||.||.||.||||||||.|||.|.||||
BPUM_1414___s    726 GTTCGGAATGGGACTTGGTCAAAGTAGGCAAAAATTCTTCTATTTACCTG    775

BSNT_02514___    788 AGCCGCAAACAGACTTTATTTTCGCCATCTTGTCAGAGGAGCTGGGCTTT    837
                     ||||.|||||.|||||.||.||.||.||.|||||.||.|||||.||||||
BPUM_1414___s    776 AGCCCCAAACGGACTTCATCTTTGCGATATTGTCTGAAGAGCTTGGCTTT    825

BSNT_02514___    838 ATCGGGGGAACACTTATTTTGCTCCTCTTCAGCGTCCTGCTGTGGAGAGG    887
                     ||.||.|||.||||||||||.||||||||.||.||.||..|.||||||||
BPUM_1414___s    826 ATAGGAGGATCACTTATTTTACTCCTCTTTAGTGTTCTATTATGGAGAGG    875

BSNT_02514___    888 AATCAGAATTGCGCTTGGTGCCCCTGATCTGTACGGAAGCTTTGTCGCAG    937
                     .||..||||.||.|||||.||.||.||..|.||.||.||.||..|.||||
BPUM_1414___s    876 CATACGAATAGCACTTGGAGCGCCAGACTTATATGGGAGTTTCCTAGCAG    925

BSNT_02514___    938 TCGGTATTATTTCAATGATTGCCATTCAAGTCATGATCAATATCGGCGTA    987
                     |.|||||||||||||||.|||||||||||||.|||||.||.||||..||.
BPUM_1414___s    926 TTGGTATTATTTCAATGGTTGCCATTCAAGTAATGATTAACATCGCAGTT    975

BSNT_02514___    988 GTCACGGGCCTGATTCCTGTAACAGGCATCACGCTCCCGTTTCTGAGCTA   1037
                     |||||.||.|||||||||||.|||||.||.||||||||.||.||.||.||
BPUM_1414___s    976 GTCACTGGACTGATTCCTGTGACAGGTATTACGCTCCCATTCCTTAGTTA   1025

BSNT_02514___   1038 CGGAGGCTCTTCATTGACTCTAATGCTGATGGCAGTTGGTGTGCTGCTGA   1087
                     .||.|||||.||||||||..|||||||||||||..||||.||.||.||||
BPUM_1414___s   1026 TGGCGGCTCATCATTGACATTAATGCTGATGGCGATTGGCGTACTTCTGA   1075

BSNT_02514___   1088 ATGTAAGCCGCTACTCGAGGTATTAA   1113
                     ||||.|||.|.|||.|.||.|||||.
BPUM_1414___s   1076 ATGTCAGCAGGTACGCAAGATATTAG   1101


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