Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02521 and BPUM_1418
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:01
# Commandline: needle
# -asequence dna-align/BSNT_02521___ylxW.1.24716.seq
# -bsequence dna-align/BPUM_1418___ylxW.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02521___ylxW-BPUM_1418___ylxW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02521___ylxW-BPUM_1418___ylxW.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02521___ylxW
# 2: BPUM_1418___ylxW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 748
# Identity: 482/748 (64.4%)
# Similarity: 482/748 (64.4%)
# Gaps: 110/748 (14.7%)
# Score: 1446.5
#
#
#=======================================
BSNT_02521___ 1 TTGAGGGGCAAATCAGCAGTCCTTCTTTCCTTGATT---ATGCTTATCGC 47
||||||||||||.||| ||.|.|.||..||| ||||||.|...
BPUM_1418___y 1 TTGAGGGGCAAAACAG------TTATATTCTCAATTGTCATGCTTGTTCT 44
BSNT_02521___ 48 AGGTTTTTTGATTTCATTTTCTTTTCAA-ATGACAAA--AGAAAACAACA 94
.||.|||.||||.||.|||||.|..||| || ||||| || ||.||
BPUM_1418___y 45 TGGCTTTCTGATATCTTTTTCATACCAATAT-ACAAAGCAG----CATCA 89
BSNT_02521___ 95 AAAGCGCGGCTGAGA-------CGGA-AGAG---TGGAAAAAAGAATATG 133
||| ||| |||| |||| ||||||||||||||..
BPUM_1418___y 90 -------GGC--AGATGTCATTCGGACAGAGCAATGGAAAAAAGAATACT 130
BSNT_02521___ 134 CGCTGAGAGATGAACTGCTGAAA---CAAGAGAAAGAAAATAAGAAGTTT 180
|.||||.|..| |.|||.|.| |||||.||.|..|||.||||..|.
BPUM_1418___y 131 CTCTGAAAAGT---CAGCTCACAACGCAAGAAAAGGCGAATCAGAAACTC 177
BSNT_02521___ 181 GAAAAAGAATTAT----------ATCAAAAG--CAA--AACAAAGTCCGC 216
||||||||||||| ||||||.| ||| ||||.|||||
BPUM_1418___y 178 GAAAAAGAATTATATAGTCTTCAATCAAAGGTACAAGCAACAGAGTCC-- 225
BSNT_02521___ 217 CAGGCGGAAAAT----AAGCTGAAGAAAGAGAAGTCGGAATACTATAATG 262
||| ||..|||| ||||||.|| ||.|.|||||
BPUM_1418___y 226 ---------AATTTGAAAAATGAA-AAAGAGCAG------TATTTTAATG 259
BSNT_02521___ 263 TCCTCGAAGATACAGAAAAATACAGGATGTATATTGGGGAAGTCGGTGTG 312
|.||.||||||...||.||||||||.||||.||..||.||..||||||..
BPUM_1418___y 260 TGCTGGAAGATGTTGAGAAATACAGAATGTTTACAGGAGAGATCGGTGCA 309
BSNT_02521___ 313 CAGGGAGAAGGCGTTGAGGTGACATTGGAAGATGCGTCATACATACCGGA 362
.|.|||.||||.||..|.|||.|..|.||||||||.||.||.||.|||
BPUM_1418___y 310 AAAGGAAAAGGGGTAAAAGTGTCTCTTGAAGATGCATCCTATATCCCG-- 357
BSNT_02521___ 363 AGGGG--AGAATGTGAATAGTTACATCGTTCACGAAAGCCATATCTTCCA 410
||.|| |.|||||.||||.||||||.||.||.||.||||||||.||.||
BPUM_1418___y 358 AGTGGACAAAATGTCAATAATTACATTGTGCATGAGAGCCATATTTTTCA 407
BSNT_02521___ 411 AGTAGTAAACGAACTGTATATCTCAGGAGCGGCAGCTGTCGCCGTTAATG 460
.||..||||||||||.|.|||.|||||.||..|.|||||..|..||||||
BPUM_1418___y 408 TGTGATAAACGAACTATTTATATCAGGTGCTTCTGCTGTATCTATTAATG 457
BSNT_02521___ 461 GACAGCGTTTGACGCATGATTCGTATATCAAATGCAATGGTCCTGTGGTA 510
||||..|..|.||.|||.|.||.||.||..|.||.||.||.||.||.||.
BPUM_1418___y 458 GACAAAGAATCACACATCAATCATACATACATTGTAACGGACCAGTTGTC 507
BSNT_02521___ 511 ACGGTAGACGGGGTGCAGCATCCCGCTCCGTTTACGGTATCCGCTATTGG 560
||.|||||.||.||.||||||||.||.||.|||....||||.||||||||
BPUM_1418___y 508 ACAGTAGATGGTGTTCAGCATCCAGCACCATTTGTCATATCTGCTATTGG 557
BSNT_02521___ 561 AGATCCAGATGT-------CCTGCTGCCCTCGTTAAATATCGCTGGAGGC 603
.|||||||.||| |||||| ||||||||.||.||.||.
BPUM_1418___y 558 TGATCCAGCTGTGTTAATACCTGCT-------TTAAATATTGCAGGGGGA 600
BSNT_02521___ 604 CTAATTGATCAGCTGTCAATGGATCATATTTCTGTGTCG---GCAGAAAA 650
.|..|.|||||||||.|||..|||||.|||||..||.|| | ||||||
BPUM_1418___y 601 GTGGTCGATCAGCTGACAAGTGATCACATTTCAATGACGATTG-AGAAAA 649
BSNT_02521___ 651 AGAGAAAAACGTACAAATGAAACCGATTCTGA-AAACGAAGGAATGA- 696
.| ||.|..||| |||||.||..||.|.| ||||.||| ||.|
BPUM_1418___y 650 CG-GATATTCGT----ATGAACCCTCTTTTAAGAAACAAAG--ATTAA 690
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