Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02531 and BPUM_1426
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:03
# Commandline: needle
# -asequence dna-align/BSNT_02531___sigE.1.24716.seq
# -bsequence dna-align/BPUM_1426___sigE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02531___sigE-BPUM_1426___sigE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02531___sigE-BPUM_1426___sigE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02531___sigE
# 2: BPUM_1426___sigE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 728
# Identity: 556/728 (76.4%)
# Similarity: 556/728 (76.4%)
# Gaps: 16/728 ( 2.2%)
# Score: 2091.0
#
#
#=======================================
BSNT_02531___ 1 ATGAAAAAACTGAAATTACGGTTGACGCACCT----CTGGTATAAGCTGC 46
|||||||||.|.||||| |..||.|||.| |||||||||.||.|
BPUM_1426___s 1 ATGAAAAAAATAAAATT----TAAACTCACTTACTACTGGTATAAACTCC 46
BSNT_02531___ 47 TGATGAAACTTGGGCTGAAAAGTGATGAAGTCTATTACATAGGCGGGAGT 96
|.|||||.||.||.||.||.|||||||||.|.|||||.||.||.||.|||
BPUM_1426___s 47 TCATGAAGCTAGGTCTAAAGAGTGATGAAATATATTATATTGGTGGAAGT 96
BSNT_02531___ 97 GAAGCCCTGCCGCCTCCATTATCTAAAGATGAGGAGCAGGTTTTGTTAAT 146
|||||.||.||||||||||||||.||.|||||.|||||||...||.|..|
BPUM_1426___s 97 GAAGCGCTCCCGCCTCCATTATCAAAGGATGAAGAGCAGGAGCTGCTTGT 146
BSNT_02531___ 147 GAAGCTCCCAAACGGCGATCAGGCGGCGCGCGCCATTCTAATTGAACGCA 196
.||..|.|||||.||.|||||..|.||..|.||.|||.||||||||.|.|
BPUM_1426___s 147 CAAATTACCAAAAGGTGATCAAACCGCAAGAGCGATTTTAATTGAAAGAA 196
BSNT_02531___ 197 ATTTGCGTCTGGTCGTATATATCGCCCGTAAATTTGAAAATACGGGAATT 246
||||.|||.|.|||||.||.|||||..|.||||||||.||.|||||.|||
BPUM_1426___s 197 ATTTACGTTTAGTCGTTTACATCGCAAGAAAATTTGAGAACACGGGTATT 246
BSNT_02531___ 247 AATATAGAGGATTTAATCAGCATCGGTACCATCGGACTAATCAAAGCTGT 296
|||||.|||||.|||||.||.|||||.|||||.||..|.||||||||.||
BPUM_1426___s 247 AATATTGAGGACTTAATTAGTATCGGAACCATTGGTTTGATCAAAGCAGT 296
BSNT_02531___ 297 GAATACATTCAATCCAGAAAAGAAAATCAAGCTTGCTACCTATGCCTCCC 346
.||||||||.||.||||||||.||.|||||.|||||.||.|||||.||..
BPUM_1426___s 297 CAATACATTTAACCCAGAAAAAAAGATCAAACTTGCAACATATGCGTCGA 346
BSNT_02531___ 347 GGTGTATAGAAAATGAAATCCTGATGTATTTAAGAAGAAATAACAAAATC 396
|.|||||.||||||||.||..|||||||.||..|..||||||||||||||
BPUM_1426___s 347 GATGTATTGAAAATGAGATTTTGATGTACTTGCGTCGAAATAACAAAATC 396
BSNT_02531___ 397 CGTTCAGAGGTTTCCTTTGATGAACCGCTTAATATTGATTGGGACGGCAA 446
||.|||||.|||||.||||||||.|||||.||.||||||||||||||.||
BPUM_1426___s 397 CGGTCAGAAGTTTCGTTTGATGAGCCGCTCAACATTGATTGGGACGGAAA 446
BSNT_02531___ 447 TGA---GCTTTTGCTTTCTGATGTGCTCGGCACTGACGATGACATCATCA 493
||| ||||| |.||.||.||.||.||.||.||.|||||.||.||||
BPUM_1426___s 447 TGAACTGCTTT---TATCAGACGTACTTGGAACAGATGATGATATTATCA 493
BSNT_02531___ 494 CTAAAGACATAGAAGCTAACGTCGATAAAAAGCTTTTGAAAAAAGCGCTT 543
|....||.||.|||||.||.||.||||||||..|..|.|||||||||||.
BPUM_1426___s 494 CACGCGATATTGAAGCAAATGTAGATAAAAAATTGCTAAAAAAAGCGCTA 543
BSNT_02531___ 544 GAACAGCTTAATGAGAGAGAAAAGCAAATCATGGAGCTGCGGTTTGGGCT 593
||.||..|.|||||..|.||||||||.||||||||.||..|.||| ||||
BPUM_1426___s 544 GAGCAATTAAATGACCGTGAAAAGCAGATCATGGAACTTAGATTT-GGCT 592
BSNT_02531___ 594 T-GTCGGTGAAGAAGAAAAAACCCAAAAGGATGTAGCGGATATGATGGGG 642
| ||.||.|..||.||||||||||||||.|||||.||.||.|||.|.|||
BPUM_1426___s 593 TAGTTGGCGGTGAGGAAAAAACCCAAAAAGATGTTGCTGACATGCTTGGG 642
BSNT_02531___ 643 ATTTCTCAGTCTTATATTTCGCGGCTTGAGAAAAGAATTATAAAAAGATT 692
|||||||||||||||||||||.|||||||.||||||||.||.|||.||||
BPUM_1426___s 643 ATTTCTCAGTCTTATATTTCGAGGCTTGAAAAAAGAATCATTAAACGATT 692
BSNT_02531___ 693 GAGAAAAGAGTTCAACAAAATGGTGTAA 720
...||||||.||.||.||||||||.|||
BPUM_1426___s 693 ACAAAAAGAATTTAATAAAATGGTCTAA 720
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