Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02540 and BPUM_1438
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:04
# Commandline: needle
# -asequence dna-align/BSNT_02540___ylmF.1.24716.seq
# -bsequence dna-align/BPUM_1438___ylmF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02540___ylmF-BPUM_1438___ylmF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02540___ylmF-BPUM_1438___ylmF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02540___ylmF
# 2: BPUM_1438___ylmF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 474
# Identity: 346/474 (73.0%)
# Similarity: 346/474 (73.0%)
# Gaps: 33/474 ( 7.0%)
# Score: 1248.0
#
#
#=======================================
BSNT_02540___ 1 ATGAGTATGAAGAATAAACTGAAAAACTTTTTCTCAATGGAAGATGAAGA 50
|||||.||.||.|||||..|.||||.|||||||.|..|.||.||||||||
BPUM_1438___y 1 ATGAGCATAAAAAATAAGTTTAAAAGCTTTTTCACTCTCGACGATGAAGA 50
BSNT_02540___ 51 ATACGAATATGAATATATTGA-GACAGAGCGGGAATCTCATGAGGAG--C 97
.||.||.||.||||||||||| || |||..|.|||.| || |
BPUM_1438___y 51 GTATGAGTACGAATATATTGATGA-AGAAAGAGAACC--------AGTCC 91
BSNT_02540___ 98 ATGAGCAAAAAGAAAAGCCGGCTTATAC---GGGGAAT----AAACCTTC 140
|.||..||||||.||.|..|| || |.||.|| |.|.|.||
BPUM_1438___y 92 AAGAAGAAAAAGGAACGAAGG-----ACAAAGCGGCATTTCAAGAGCGTC 136
BSNT_02540___ 141 --------GGGCAAACAGAATGTAGTGAGCTTGCAAAGTGTTCAGAAATC 182
||| |||||.|||||.||.|||||||||||.||.||||||||
BPUM_1438___y 137 CGCAGACTGGG-AAACAAAATGTCGTCAGCTTGCAAAGCGTGCAGAAATC 185
BSNT_02540___ 183 CTCTAAAGTGGTGTTGAGTGAGCCGCGCGTTTATGCGGAGGCGCAGGAAA 232
|||||||||||||||.|||||||||||.||||||||.||.||||||||.|
BPUM_1438___y 186 CTCTAAAGTGGTGTTAAGTGAGCCGCGTGTTTATGCAGAAGCGCAGGAGA 235
BSNT_02540___ 233 TAGCCGACCATTTGAAGAACCGGCGGGCAGTTGTCGTCAATCTTCAGCGG 282
|.||.||.|||.|.||.|||.|.||.||.||.|||||||||.|.|||||.
BPUM_1438___y 236 TTGCAGATCATATTAAAAACAGACGTGCTGTCGTCGTCAATTTGCAGCGT 285
BSNT_02540___ 283 ATACAGCATGACCAGGCGAAGCGGATTGTTGACTTTTTAAGCGGAACCGT 332
||.|||||.||.||.||.|||||.||..|.|||||.|||||||||||.||
BPUM_1438___y 286 ATTCAGCACGATCAAGCAAAGCGAATCATCGACTTCTTAAGCGGAACTGT 335
BSNT_02540___ 333 TTATGCCATCGGCGGCGATATTCAAAGAATCGGCTCAGATATTTTCCTCT 382
||||||.|||||.||.||.||.||..|.||.|||||..||||.|||||||
BPUM_1438___y 336 TTATGCGATCGGTGGAGACATCCAGCGCATTGGCTCGAATATATTCCTCT 385
BSNT_02540___ 383 GCACGCCTGACAACGTAGATGTATCAGGCACAATTTCTGAGCTCATATCT 432
||||.|||||.||.||.||||||||.||||||||.||.||.||..|..|.
BPUM_1438___y 386 GCACACCTGATAATGTGGATGTATCTGGCACAATATCAGAACTTTTGACA 435
BSNT_02540___ 433 GAAGACGAACATCAGAGGTGGTAA 456
||.||.||||.|||||||||||||
BPUM_1438___y 436 GAGGAAGAACCTCAGAGGTGGTAA 459
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