Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02548 and BPUM_1442

See Amino acid alignment / Visit BSNT_02548 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:04
# Commandline: needle
#    -asequence dna-align/BSNT_02548___ileS.1.24716.seq
#    -bsequence dna-align/BPUM_1442___ileS.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02548___ileS-BPUM_1442___ileS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02548___ileS-BPUM_1442___ileS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02548___ileS
# 2: BPUM_1442___ileS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2809
# Identity:    2125/2809 (75.6%)
# Similarity:  2125/2809 (75.6%)
# Gaps:          86/2809 ( 3.1%)
# Score: 7895.5
# 
#
#=======================================

BSNT_02548___      1 ATGGATTTTAAAGACACGCTCTTAATGCCGAAAACAGATTTCCCGATGCG     50
                     |||.|.|..||||||||..|.|||||||||||||||||.|||||.|||.|
BPUM_1442___i      1 ATGAACTACAAAGACACCTTATTAATGCCGAAAACAGAATTCCCTATGAG     50

BSNT_02548___     51 TGGAAATTTGCCAAACCGTGAGCCTGACATTCAAAAAAAATGGGAGGAAG    100
                     .||.||.|||||.|||...||||||||.||.|||.|..|.||||..|||.
BPUM_1442___i     51 AGGGAACTTGCCGAACAAAGAGCCTGAAATCCAAGAGGAGTGGGCAGAAA    100

BSNT_02548___    101 AGGATATCTACCGTCTTGTTCAGGAACGGACGAAAGACCGCCCGAAATTT    150
                     |.||.|||||.|...|.|||...||.|||||.||||..|||||||..|||
BPUM_1442___i    101 AAGACATCTATCAAATGGTTTTAGAGCGGACAAAAGGACGCCCGACCTTT    150

BSNT_02548___    151 GTTTTACATGACGGACCTCCGTATGCAAACGGCGACATCCATATGGGCCA    200
                     .||||.|||||.||||||||.|||||.||.||.|||||.||||||||.||
BPUM_1442___i    151 ATTTTGCATGATGGACCTCCATATGCGAATGGTGACATTCATATGGGGCA    200

BSNT_02548___    201 TGCACTTAACAAGATTTTGAAAGACTTCATTGTCCGCTATAAATCAATGA    250
                     .||.||.||.||.|||.|.|||||.||.||||||||.|.|||||||||||
BPUM_1442___i    201 CGCCCTCAATAAAATTCTAAAAGATTTTATTGTCCGTTTTAAATCAATGA    250

BSNT_02548___    251 GCGGCTACAACGCACCGTATGTGCCGGGCTGGGATACACACGGATTGCCA    300
                     ..||.|.|.||||||||||.||.|||||||||||||||||.||.||.|||
BPUM_1442___i    251 ATGGGTTCCACGCACCGTACGTACCGGGCTGGGATACACATGGCTTACCA    300

BSNT_02548___    301 ATTGAAACAGCTCTGACAAAAAACAAAAAGGTCAACCGCAAAGAAATGTC    350
                     |||||||||||.||.||||||||.|||||.|||||.||||||||||||||
BPUM_1442___i    301 ATTGAAACAGCACTCACAAAAAATAAAAAAGTCAAACGCAAAGAAATGTC    350

BSNT_02548___    351 AGTAGCGGAATTCCGCAAACTATGCGAAGAGTACGCTTGGAAGCAAATCG    400
                     ...|||.||||||||||||||||||||||||||.||||||||||||||||
BPUM_1442___i    351 TACAGCTGAATTCCGCAAACTATGCGAAGAGTATGCTTGGAAGCAAATCG    400

BSNT_02548___    401 AGGGACAGCGTGAGCAATTCAAACGTCTTGGTGTCCGCGGTGACTGGGAA    450
                     |.||||||||..|.||.||.||.||..|.||.|||.|.|..||||||||.
BPUM_1442___i    401 AAGGACAGCGCAATCAGTTTAAGCGATTAGGCGTCAGAGCAGACTGGGAC    450

BSNT_02548___    451 AACCCATATGTGACATTAAAACCGGAATACGAAGCGCAGCAAATCCGCGT    500
                     ||.||||||||.||..||||.||.||.|||||||||||||||||.|..||
BPUM_1442___i    451 AATCCATATGTCACGCTAAAGCCTGAGTACGAAGCGCAGCAAATTCTTGT    500

BSNT_02548___    501 ATTTGGTGAAATGGCAAAACGAGGCTACATTTACAAAGGCCTTAAACCGG    550
                     .||.|||||||||||.||..|||||||.|||||||||||..|.|||||.|
BPUM_1442___i    501 CTTCGGTGAAATGGCGAAGAGAGGCTATATTTACAAAGGATTAAAACCAG    550

BSNT_02548___    551 TTAACTGGTCACCTTCAAGTGAGTCTGCTCTGGCTGAAGCCGAGATCGAA    600
                     ||||||||||.||||||||||||||.|||||.||||||||.||.||.|||
BPUM_1442___i    551 TTAACTGGTCTCCTTCAAGTGAGTCAGCTCTTGCTGAAGCGGAAATTGAA    600

BSNT_02548___    601 TATCAAGACAAACGTTCAGCATCTATTTACGTCGCTTTTGGTGTAAAAGA    650
                     |||.||||||||||||||.||||.||||||||..|.|||...||.|||||
BPUM_1442___i    601 TATAAAGACAAACGTTCACCATCCATTTACGTTTCATTTAAAGTGAAAGA    650

BSNT_02548___    651 CGGAAAAGGCGTTCTTGAAAACGGTGAGCGCATCATCATTTGGACAACAA    700
                     .|||||||||||.||||||||||..||.|...|||||||.||||||||||
BPUM_1442___i    651 TGGAAAAGGCGTACTTGAAAACGACGAACAATTCATCATCTGGACAACAA    700

BSNT_02548___    701 CGCCTTGGACAATTCCGGCGAACCTCGGAATCTCAGTGCACCCTGATCTT    750
                     |.|||||||||.||||.||.|||||.||.||.|..||.||.||..|.||.
BPUM_1442___i    701 CACCTTGGACACTTCCTGCAAACCTTGGTATTTGTGTTCATCCCAACCTA    750

BSNT_02548___    751 GAGTACAGCGTGATTGCAGTAGGTGAAGACCGCTTTGTCGTAGCAAGTGC    800
                     |||||||||||..||..|||.||||..||.||.|.|||.||.|||..||.
BPUM_1442___i    751 GAGTACAGCGTTCTTCAAGTGGGTGCTGAGCGATATGTTGTTGCATCTGA    800

BSNT_02548___    801 CTTAGTCGAAAATGTTGCATCGGC----ATGC--GGATTTGATCAGTATG    844
                     ..|.||.|||.|.||      |||    |.||  ||.|||||..||||||
BPUM_1442___i    801 ACTCGTTGAACAAGT------GGCAAAAACGCTTGGTTTTGAAGAGTATG    844

BSNT_02548___    845 AAG-TGACAAGAACGGTCAAAGGGAAAGATCTTGAGAACATTATCGCTGA    893
                     ||| ||..|| |||..|.|||||.|||||..|.||.|||.|..|.||.||
BPUM_1442___i    845 AAGTTGTGAA-AACATTAAAAGGAAAAGAATTAGACAACGTCGTTGCAGA    893

BSNT_02548___    894 ACACCCTCTATATGGCAGAGACTCTCTCGTTATGCTTGGTGAACACGTAA    943
                     .||.||..|.|||||.|||||.||.||.||.|||||||||||.|||||.|
BPUM_1442___i    894 GCATCCGATTTATGGTAGAGATTCACTTGTGATGCTTGGTGATCACGTGA    943

BSNT_02548___    944 CAACTGATGCCGGAACAGGCTGTGTTCATACAGCGCCAGGACATGGGGAA    993
                     ||||.|||||.||.||||||||||||||||||||||||||.||.|||||.
BPUM_1442___i    944 CAACAGATGCAGGTACAGGCTGTGTTCATACAGCGCCAGGTCACGGGGAG    993

BSNT_02548___    994 GATGACTTTATCATCGGCCAAAAATACGGTTTAGATGTGCTTTGCCCGGT   1043
                     |||||||||||..||.||...||.||||||.||||.||.||.||.||.||
BPUM_1442___i    994 GATGACTTTATTGTCAGCATGAAGTACGGTCTAGACGTACTATGTCCAGT   1043

BSNT_02548___   1044 CGATGAAAAAGGTGTAATGACAAGCGAAGCTCCTGGCTTTGAAGGCATGT   1093
                     .||.|||||||||||.||||||...|||||.|||||.||||||||..|.|
BPUM_1442___i   1044 AGACGAAAAAGGTGTCATGACAGAAGAAGCGCCTGGTTTTGAAGGACTAT   1093

BSNT_02548___   1094 TCTATGATGATGCAAACAAAGCGATCACACAGCAGCTTGATGAAAAAGGC   1143
                     ||||.||.|||||.||.|||||.||||||.|.||||||||.|.|||||||
BPUM_1442___i   1094 TCTACGAAGATGCGAATAAAGCTATCACAGAACAGCTTGAAGCAAAAGGC   1143

BSNT_02548___   1144 GCACTTGTGAAGCTTGAATTCATTACTCACTCTTATCCGCATGATTGGAG   1193
                     ||.||....|||||.||.||.||.||.||||||||.||||||||||||||
BPUM_1442___i   1144 GCGCTGAAAAAGCTCGACTTTATCACGCACTCTTACCCGCATGATTGGAG   1193

BSNT_02548___   1194 AACGAAAAAACCAACCATTT-TCAGAGCGACAGCGCAATGGTTTGCGTCT   1242
                     |||||||||.|||||.|||| || |.||.||.||.||.|||||||||||.
BPUM_1442___i   1194 AACGAAAAAGCCAACGATTTATC-GTGCAACCGCTCAGTGGTTTGCGTCG   1242

BSNT_02548___   1243 ATTAAAGATTTCAGATCAGACCTGCTGGATGCCATTAAAGAAACCAAATG   1292
                     ||||||||.||||||..||..||.||.|||...|||||||||||.|||||
BPUM_1442___i   1243 ATTAAAGACTTCAGAGAAGCGCTTCTAGATAATATTAAAGAAACGAAATG   1292

BSNT_02548___   1293 GGTTCCTGAATGGGGCGAG-CA-GCGTTTGCACAACATGGTTCGGGACCG   1340
                     |||.||.|.|||||||||| || ||.|||  .|||.|||||.||.|||.|
BPUM_1442___i   1293 GGTGCCAGCATGGGGCGAGACACGCCTTT--TCAATATGGTGCGTGACAG   1340

BSNT_02548___   1341 CGGAGACTGGTGTATTTCCAGACAGCGTGCGTGGGGTGTGCCGATTCCGG   1390
                     .||.||||||||||||||.||||||||||..|||||.||.||.|||||||
BPUM_1442___i   1341 AGGCGACTGGTGTATTTCAAGACAGCGTGTCTGGGGCGTTCCAATTCCGG   1390

BSNT_02548___   1391 TATTTTACGCTGAAAACGGAGAACCGATTATTACAGATGAAACCATTGAA   1440
                     |.|||||.||||||||.||.||.||.||.||.||.||.|||||||||.|.
BPUM_1442___i   1391 TCTTTTATGCTGAAAATGGGGAGCCAATCATCACGGACGAAACCATTCAG   1440

BSNT_02548___   1441 CATGTTTCTGAATTGTTCAGACAGCACGGATCAAACATTTGGTTTGAAAA   1490
                     |||||.|||.||||.||.|||.|.||.||.||.||.||||||||||||||
BPUM_1442___i   1441 CATGTCTCTCAATTATTTAGAGAACATGGCTCGAATATTTGGTTTGAAAA   1490

BSNT_02548___   1491 AGAAGCAAAGGATCTTCTTCCGGAAGGCTTTACGCATCCTGGCAGCCCGA   1540
                     ||||||.||.||.||..|.||.|||||||||||.|||||.|||||.||||
BPUM_1442___i   1491 AGAAGCGAAAGAACTATTGCCAGAAGGCTTTACACATCCAGGCAGTCCGA   1540

BSNT_02548___   1541 ACGGCACATTTACAAAAGAACAGGATATCATGGATGTTTGGTTTGATTCA   1590
                     ||||...|||.||||||||.|||||.|||||||||||.|||||||||||.
BPUM_1442___i   1541 ACGGTGAATTCACAAAAGAGCAGGACATCATGGATGTATGGTTTGATTCC   1590

BSNT_02548___   1591 GGCTCTTCACATCAAGCAGTGCTTGAAGAACGTGATGACCTCGTTCGCCC   1640
                     ||.|||||.||.|||||.||..|.||||||.|.||||||||.|||||.||
BPUM_1442___i   1591 GGTTCTTCTCACCAAGCCGTTTTAGAAGAAAGAGATGACCTTGTTCGTCC   1640

BSNT_02548___   1641 GGCTGATTTATACCTAGAGGGATCTGACCAATATCGCGGCTGGTTTAACT   1690
                     |||.||..|.|||||.||.||.||||||||||||||||||||||||||||
BPUM_1442___i   1641 GGCAGACCTTTACCTTGAAGGCTCTGACCAATATCGCGGCTGGTTTAACT   1690

BSNT_02548___   1691 CTTCTCTT-TCTACAGCAGTAGCCGTAACAGGGAAAGCGCCGTATAAAGG   1739
                     |||| ||| ||.||||||||.||.||.||.||.|||||.|||||||||||
BPUM_1442___i   1691 CTTC-CTTATCAACAGCAGTTGCGGTCACTGGAAAAGCACCGTATAAAGG   1739

BSNT_02548___   1740 TGTGCTCAGCCATGGGTTCGCACTGGATGGAGAAGGACGCAAGATGAGTA   1789
                     |||.||.|||||.||.||..|.||.|||..||||||||||||||||||||
BPUM_1442___i   1740 TGTTCTGAGCCACGGCTTTACGCTTGATAAAGAAGGACGCAAGATGAGTA   1789

BSNT_02548___   1790 AATCAATCGGTAACGTTGTTGTTCCGGCTAAAGTCATGAAACAGCTTGGT   1839
                     |||||.|.||.||.....|||..||..|.||.||...|||.||||||||.
BPUM_1442___i   1790 AATCATTAGGCAATACAATTGACCCAACAAAGGTAGCGAAGCAGCTTGGG   1839

BSNT_02548___   1840 GCCGACATCTTAAGATTATGGGTATCTTCAGTGGATTATCAGGCGGACGT   1889
                     ||.||.||..|||||.|.|||||||||||.||..|.|||||.||   ||.
BPUM_1442___i   1840 GCGGAGATTCTAAGACTTTGGGTATCTTCTGTCAACTATCAAGC---CGA   1886

BSNT_02548___   1890 TCGC---GTGTCTGACGCCATTCTAAAGCAGGTTGCGGAAGTATATCGTA   1936
                     ||.|   ||||||||.|..||..||||.||.||.||.|||||.|||||||
BPUM_1442___i   1887 TCACCCGGTGTCTGATGATATCTTAAAACAAGTAGCAGAAGTCTATCGTA   1936

BSNT_02548___   1937 AAATCCGCAACACGTTCCGTTTCCTTCACGGCAACCTTTTCGATTTTGAT   1986
                     |||||||.|||||||||||.|||||.|||||.|||||.||.||.||||||
BPUM_1442___i   1937 AAATCCGTAACACGTTCCGCTTCCTGCACGGTAACCTATTTGACTTTGAT   1986

BSNT_02548___   1987 CCAAAAACAAATGCGGTGGCTGTCGAAGATCTTCGTGAAGTGGATCAGTA   2036
                     |||..|...|||||||||.||||.|||||.|||||.|||||||||||.||
BPUM_1442___i   1987 CCAGCAGTCAATGCGGTGCCTGTAGAAGAGCTTCGCGAAGTGGATCAATA   2036

BSNT_02548___   2037 TATGCTGATTAAGCTGAACAAGCTGATTGATAAAGTGAAAAAAGCGTATG   2086
                     |||..||||.||..|.|||||..|||||||.|||||||||||.||.||||
BPUM_1442___i   2037 TATCTTGATCAAATTAAACAAATTGATTGAGAAAGTGAAAAAGGCATATG   2086

BSNT_02548___   2087 ATGAGTACGAATTTGCGGTTGTGTATCACAGC-ATTCATAATTTCTGCAC   2135
                     ||||.||||||||||||||.|||||||| .|| |||||.||||||||.||
BPUM_1442___i   2087 ATGATTACGAATTTGCGGTCGTGTATCA-TGCGATTCACAATTTCTGTAC   2135

BSNT_02548___   2136 AATCGAATTGAGCTCATTCTACCTTGATTTTGCAAAAGATATTGTCTACA   2185
                     |||.||..|.||.||.|||||.||.||.||||||||.|||.|.||.||||
BPUM_1442___i   2136 AATTGAGCTAAGTTCTTTCTATCTCGACTTTGCAAAGGATGTCGTGTACA   2185

BSNT_02548___   2186 TCGAGCATGCGGATCATCCGGATAGACGCAGCATGCAGACAGTATTCTAC   2235
                     |.|||||||||||||||||.||..|.||||||||||||||.||.||||||
BPUM_1442___i   2186 TTGAGCATGCGGATCATCCAGACCGCCGCAGCATGCAGACGGTCTTCTAC   2235

BSNT_02548___   2236 GAAACGCTTCTTGCATTAGTGAAGCTTTCAGCGCCTATCCTTCCACATAC   2285
                     |||||..|..|.||.||||||||.||..||||.||.||.|||||.|||||
BPUM_1442___i   2236 GAAACATTGATGGCGTTAGTGAAACTGACAGCACCAATTCTTCCGCATAC   2285

BSNT_02548___   2286 GGCAGACGAATTGTGGTCTCATTTAACATTTGTTGAAGAGCAGAGCGTTC   2335
                     .|||||.|||||.|||...||.||||..|||||||||||||..||.||||
BPUM_1442___i   2286 AGCAGATGAATTATGGAGCCACTTAAGCTTTGTTGAAGAGCCAAGTGTTC   2335

BSNT_02548___   2336 AGCTGACCGATATGCCGGAAACAATCGCGGTT--CCAAACAGTGAAGCGA   2383
                     |..|.||.||||||||.|||....|..|||||  .|||.|  .||.||||
BPUM_1442___i   2336 AATTAACAGATATGCCAGAAGGTGTGACGGTTTCTCAAGC--GGATGCGA   2383

BSNT_02548___   2384 CTGAAGAAAAATTTGACCGCTTTATGGCTCTTCGTGATGACGTGTTAAAA   2433
                     |.||||..||.||||||||||||||||...|.|||||.||.|||.|||||
BPUM_1442___i   2384 CAGAAGCGAAGTTTGACCGCTTTATGGAAGTGCGTGACGATGTGCTAAAA   2433

BSNT_02548___   2434 GCATTAGAAACTGCGCGAAATGAAAAAATTATCGGTAAATCTTTGGAAGC   2483
                     ||..|.||||.|||.||.|||||.|||.|.|||||....|||.|.|||||
BPUM_1442___i   2434 GCGCTCGAAATTGCACGTAATGAGAAAGTGATCGGACGTTCTCTTGAAGC   2483

BSNT_02548___   2484 AAACCTGAAATTGTATCCAAACA-AAGAA---AACAAGGAGCTCT--TGG   2527
                     ||...|||...|.|||.| .||| |||||   ||.||     |||  |.|
BPUM_1442___i   2484 AAGTGTGACCCTTTATGC-GACAGAAGAAGTGAAAAA-----TCTTCTTG   2527

BSNT_02548___   2528 CTTCCATAAAAGAAAACCTTTCT----CAGCTGTTTATTGTGTCTGAACT   2573
                     |.|||||.||||||.|    |.|    |||||.|||||..|.||||    
BPUM_1442___i   2528 CATCCATTAAAGAAGA----TGTGAAGCAGCTCTTTATCATCTCTG----   2569

BSNT_02548___   2574 GATAATCAGC-GAAGAAAATGATGCGCCGAACG-------ATGCGC----   2611
                        |||.|.| |.||||   |||||||..||.|       ||.|||    
BPUM_1442___i   2570 ---AATTAACGGTAGAA---GATGCGCAAAATGCTGACACATCCGCACCT   2613

BSNT_02548___   2612 ----AAAGTTTTGCGACGGGTAAAATCGCTGTCGAGAAAGCGGAAGGCGA   2657
                         |.|.||      |.||.|.|||.|..||..|.|||||.|||||.||
BPUM_1442___i   2614 GAATACACTT------CAGGAAGAATTGTGGTTCAAAAAGCAGAAGGAGA   2657

BSNT_02548___   2658 AATGTGTGAGAGATCACGTGTGATTTCAAAAGATGTAGGTGCAAACCCGA   2707
                     |.|.||.||..|.||.|||.|.|||||.||||||||.||||||||.||||
BPUM_1442___i   2658 ACTATGCGAACGTTCTCGTATTATTTCTAAAGATGTTGGTGCAAATCCGA   2707

BSNT_02548___   2708 AATATCCTACACTTTCATTACGCAACGCTGAAATCGTTGAAAAATACTAT   2757
                     ||||.||.|||.|.|||.|....||.|||||||||||.||||||||.||.
BPUM_1442___i   2708 AATACCCAACATTGTCACTGAAAAATGCTGAAATCGTGGAAAAATATTAC   2757

BSNT_02548___   2758 CAAAAATAA   2766
                     ||.||.|||
BPUM_1442___i   2758 CAGAATTAA   2766


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