Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02549 and BPUM_1443

See Amino acid alignment / Visit BSNT_02549 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:04
# Commandline: needle
#    -asequence dna-align/BSNT_02549.1.24716.seq
#    -bsequence dna-align/BPUM_1443___ylyA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02549-BPUM_1443___ylyA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02549-BPUM_1443___ylyA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02549
# 2: BPUM_1443___ylyA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 405
# Identity:     248/405 (61.2%)
# Similarity:   248/405 (61.2%)
# Gaps:          60/405 (14.8%)
# Score: 597.0
# 
#
#=======================================

BSNT_02549         1 ATGAAT---GATCAACTGACCGCAATTTATACGGAACTTCTTCTGATGAA     47
                     ||||.|   ||.|.|..||   |.|||||.||||||||.||||..|||||
BPUM_1443___y      1 ATGATTGGCGACCTAGAGA---CGATTTACACGGAACTCCTTCAAATGAA     47

BSNT_02549        48 AGAAGAATTACAGTCGAGATTATTTGAGTATTCTTGCTTTCAGGTTTCTA     97
                     ||||||..|.||..|.|.|.|.|||||.||..|.|..||||  |||    
BPUM_1443___y     48 AGAAGAGCTGCAAGCTAAACTGTTTGAATACACATCATTTC--GTT----     91

BSNT_02549        98 CAAGCCCGC-AAGCA----GCAATCAATCATAAACAAAAAGCAACTCTGA    142
                     ||  ||||| .||||    .||||.||..|....||||..||.||.||..
BPUM_1443___y     92 CA--CCCGCTGAGCATGTCTCAATGAACGAGGTTCAAACGGCCACGCTTC    139

BSNT_02549       143 TCTATCATATTAAAGAAGAGCTTCAAGACGT-TCTCCTTGC-ATTGTCCA    190
                     |.||.||.||.||||||||.||||||||.|| ||| ||.|| |||| |.|
BPUM_1443___y    140 TTTACCACATCAAAGAAGAACTTCAAGATGTGTCT-CTCGCTATTG-CAA    187

BSNT_02549       191 AAATCGAAAACGGCACATTCGGATA-CTGTGAAGAAACCGGGGCTCCCAT    239
                     ||||.||..|.||.||.|..|| || .|||||.|.|||.||.|.|..|||
BPUM_1443___y    188 AAATTGAGCAAGGAACCTATGG-TATTTGTGAGGCAACAGGTGATGTCAT    236

BSNT_02549       240 TCCTCTTG--CAAAGCTGGCAG--TGCTGCCGACTGCCCGAACAGCAAAC    285
                     |||.||||  ||||  ||  ||  |.||.||.||.|||||.||||...||
BPUM_1443___y    237 TCCGCTTGAACAAA--TG--AGTATTCTTCCTACCGCCCGCACAGTTGAC    282

BSNT_02549       286 GATTTTCTTTATTCTGTCCAATTTGAAAAAAAA----ACGCTTCCGAT--    329
                     ||.|||.|.|||..|...||||..||.||||||    .|.||.|..||  
BPUM_1443___y    283 GACTTTTTATATCATAAGCAATACGAGAAAAAAGCATTCACTCCTTATCC    332

BSNT_02549       330 --ATGGAAATCAACGGATATCGAATATGG------TCAGGCAC-TGTATG    370
                       |||  |||||...||| ||..||.|.|      ||   ||| ||||. 
BPUM_1443___y    333 TCATG--AATCAGATGAT-TCTCATTTTGAAGCCTTC---CACATGTAG-    375

BSNT_02549       371 AATAA    375
                          
BPUM_1443___y    375 -----    375


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