Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02550 and BPUM_1444
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:04
# Commandline: needle
# -asequence dna-align/BSNT_02550___lspA.1.24716.seq
# -bsequence dna-align/BPUM_1444___lspA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02550___lspA-BPUM_1444___lspA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02550___lspA-BPUM_1444___lspA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02550___lspA
# 2: BPUM_1444___lspA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 489
# Identity: 333/489 (68.1%)
# Similarity: 333/489 (68.1%)
# Gaps: 51/489 (10.4%)
# Score: 1041.0
#
#
#=======================================
BSNT_02550___ 1 GTGCTGTATTATATGATTGCACTACTTATTATTGCAGCCGATCAATTGAC 50
|||.|.|||||.||.||.|||.|..|.||.|||......||||||||.||
BPUM_1444___l 1 GTGTTCTATTACATAATCGCATTCGTGATGATTTGTTTAGATCAATTAAC 50
BSNT_02550___ 51 AAAATGGCTAGTTGTTAAGAACATGGAACTTGGCCAAAGCATTCCGATC- 99
|||||||||..||||.||.||.|||...||.|| || ||||..|||
BPUM_1444___l 51 AAAATGGCTCATTGTCAAAAATATGATGCTCGG----AG-ATTCTTATCC 95
BSNT_02550___ 100 ----ATTGATCAGG--TATTCTATATCACCTCCCATCGCAATACGGGTGC 143
|||||| || |.||.||||||||.||.||.||.|||.|.||.||
BPUM_1444___l 96 AGTGATTGAT--GGCTTCTTTTATATCACGTCTCACCGAAATTCAGGCGC 143
BSNT_02550___ 144 TGCATGGGGGATATTAGCGGGTCAAATGTGGTTTTTCTACCTCATAACAA 193
.||||||||.||..|....||.|||||||||||||||||..|.||.|||.
BPUM_1444___l 144 CGCATGGGGAATTCTCCAAGGACAAATGTGGTTTTTCTATGTGATCACAC 193
BSNT_02550___ 194 CCGCTGTTATTATTGGTATTGTTTATTA----CATACAGCGTTAT--ACA 237
.||.|||||||...||.||||||||||| || |.||| || |||
BPUM_1444___l 194 TCGTTGTTATTGCGGGAATTGTTTATTATTTGCA-AAAGC---ATGGACA 239
BSNT_02550___ 238 AAGGGACAAAGGTTTCTTGGCGTTGCCCTCGGACTT-ATGCTTGGCGGTG 286
||.|||||| |.|.|||||.|||||.|| .|.||| |||||||||||.|
BPUM_1444___l 240 AAAGGACAA--GCTGCTTGGAGTTGCACT-TGCCTTAATGCTTGGCGGAG 286
BSNT_02550___ 287 CCATCGGCAACTTTATCGATCGGGCTGTCAGACAGGAAGTTGTGGATTTT 336
|.||.||.|||||||||||.||.|.|.||.|.||||||||.||.||||||
BPUM_1444___l 287 CGATTGGGAACTTTATCGACCGCGTTTTCCGTCAGGAAGTGGTAGATTTT 336
BSNT_02550___ 337 ATCCAT---GTTATT----ATTGTCAATTACCCGATATTTAACATCGCGG 379
...||| ||..|| |||.|| |.|||||.||.|||||.||.||.|
BPUM_1444___l 337 GCTCATTTCGTCTTTGGGAATTATC-ACTACCCAATCTTTAATATTGCAG 385
BSNT_02550___ 380 ACTCTTCATTATGTGTCGGCGTAATGCTTTTATTTATACAAATGCTGTTG 429
|.|||||..|||||||.||.||.||.||..|.||.||.|||||||||||.
BPUM_1444___l 386 ATTCTTCTCTATGTGTAGGAGTTATTCTGCTCTTCATTCAAATGCTGTTA 435
BSNT_02550___ 430 GACAGCGGGAAAAAGAAA---AAGGAG-CAA-TAG---- 459
||..| ||||||| |||||| ||| ||.
BPUM_1444___l 436 GATGG------AAAGAAAACGAAGGAGTCAACTACATGA 468
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