Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02566 and BPUM_1457

See Amino acid alignment / Visit BSNT_02566 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:06
# Commandline: needle
#    -asequence dna-align/BSNT_02566___cysP.1.24716.seq
#    -bsequence dna-align/BPUM_1457___cysP.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02566___cysP-BPUM_1457___cysP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02566___cysP-BPUM_1457___cysP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02566___cysP
# 2: BPUM_1457___cysP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1137
# Identity:     761/1137 (66.9%)
# Similarity:   761/1137 (66.9%)
# Gaps:         144/1137 (12.7%)
# Score: 2406.0
# 
#
#=======================================

BSNT_02566___      1 ATGGAATTAGCCGCTATTTTATTTAGCTTGTTTTTCGCGATGAATATTGG     50
                     ||||||.|.|||||.|||||||||||.||.|||||||||.|.||.|||||
BPUM_1457___c      1 ATGGAAATTGCCGCAATTTTATTTAGTTTATTTTTCGCGCTAAACATTGG     50

BSNT_02566___     51 TGCAAGCGGCGCTGCAGCTTCGATGGGGGTTGCTTACGGCTCCGGAGCCA    100
                     .||.||.||.||.||.|||||.|||||..|.||.|||||.||.||.||.|
BPUM_1457___c     51 CGCGAGTGGTGCAGCTGCTTCAATGGGCATCGCATACGGATCAGGCGCGA    100

BSNT_02566___    101 TCAAAAAGAAAACCTACGCTTTGATCCTATGCGCAGTCGGTGTCTTTGCC    150
                     |...||||...|.|||.||..|.|...||||.||.||.||..|.||.||.
BPUM_1457___c    101 TTCGAAAGCCGATCTATGCACTCAGTGTATGTGCGGTTGGGATTTTAGCA    150

BSNT_02566___    151 GGGGCGGTCATTGGCGGAGGCGAGGTTGTAAAAACAATCAGCTCCGGCAT    200
                     ||..|.|||||||||||.||.|||||.||.|||||.|||||.||.||.||
BPUM_1457___c    151 GGATCAGTCATTGGCGGCGGTGAGGTCGTCAAAACCATCAGTTCTGGGAT    200

BSNT_02566___    201 TATTCCTGAGCAGACG--ATTACAC-TGACGATTGTTTGCATCATTATTG    247
                     |||.|||||  |..||  ||||||| ||| .||||||||.||.|||||||
BPUM_1457___c    201 TATGCCTGA--ATCCGTCATTACACTTGA-AATTGTTTGTATTATTATTG    247

BSNT_02566___    248 GAGCTGCTGCCCTGTCGCTCTTTACTGCTAATCTGCTCGGC-ATTCCTTT    296
                     |..|||||||..|.||.|||||||..||.|||.||.| ||| ||.|||||
BPUM_1457___c    248 GTTCTGCTGCATTATCACTCTTTATAGCGAATTTGAT-GGCGATCCCTTT    296

BSNT_02566___    297 GTCGACAAGTGAAGTAACAGTCGGCGCGGTTGTCGGCGTGGGAGTGGCTT    346
                     .||.||.|||||.||.|||||.||.||.||.||.||.||.|..||.||.|
BPUM_1457___c    297 ATCAACGAGTGAGGTGACAGTAGGTGCTGTCGTTGGAGTTGCGGTAGCGT    346

BSNT_02566___    347 ATAAAGTATTGTTTGTGAACAATC--TTCTGATCATTGTGTCATTTTGGG    394
                     ||||||||||||.|||||  ||||  ||.|..||||.|||||.|||||||
BPUM_1457___c    347 ATAAAGTATTGTATGTGA--AATCCATTTTAGTCATCGTGTCCTTTTGGG    394

BSNT_02566___    395 TTTTTGTCCCGCTGTTCGCTTTCGGCTTCA--CCTATTTCGTATCTAAGC    442
                     |                        |.|||  ||||||          |.
BPUM_1457___c    395 T------------------------CATCATTCCTATT----------GT    410

BSNT_02566___    443 TGTTTCGTTATTTTAA----GATTGAAGT-AAAATCTTCTAAAAAG----    483
                     ||.||  ||.||||.|    .||||.||| ||||||.|| |.||.|    
BPUM_1457___c    411 TGCTT--TTCTTTTTACATTCATTGTAGTCAAAATCATC-AGAATGTTCC    457

BSNT_02566___    484 ---------------CAAAAAA-------------TCCTCGGCGTTGTTT    505
                                    |||||||             |..|||  .||.|||
BPUM_1457___c    458 CGAAACGAACCTTTTCAAAAAAAGGCACTTTGATTTTATCG--ATTATTT    505

BSNT_02566___    506 TG----TTAGTTGCCGGATTTTTCGAAGCATTCTCTGCCGGCATGAATAA    551
                     ||    |||||    ||||||.|.||||||||.|||||.||.|||||.||
BPUM_1457___c    506 TGATCATTAGT----GGATTTCTAGAAGCATTTTCTGCTGGGATGAACAA    551

BSNT_02566___    552 CGTGGCGAATGCTGTTGG-CCCGTTAGTAGCTGCCGGTGTGCTTGA--TG    598
                     .||.||.||||||||.|| |||.|| ||.|||.|.||..|  ||.|  ||
BPUM_1457___c    552 TGTCGCCAATGCTGTAGGTCCCCTT-GTTGCTTCAGGCAT--TTTATCTG    598

BSNT_02566___    599 TCGGAAAAGGAAC-CTTGTATGGAGGAGCTTTT-GTTGCTCTTGGCGCAC    646
                     |.||..||||||| ||| ||.||.|| |||||| |||||.|||||.||.|
BPUM_1457___c    599 TTGGGCAAGGAACGCTT-TACGGTGG-GCTTTTCGTTGCACTTGGTGCTC    646

BSNT_02566___    647 TGTTATTAGGCCGGCGTGTGCTAGAAACAAACGGGAAGAAAATTACGAGA    696
                     |.||||||||..|..|.||.|||||||||||.||.||||||||.||..| 
BPUM_1457___c    647 TTTTATTAGGAAGAAGGGTACTAGAAACAAATGGAAAGAAAATCACCCG-    695

BSNT_02566___    697 TTCTCCAAAGGG-GAAGGCAT-TCTCTTATCCGGTACAGGAGCCGGACTG    744
                     .|.||.||.||| |||||.|| |..||| ||.|||||.||.||.|||||.
BPUM_1457___c    696 CTATCAAACGGGCGAAGGGATATTGCTT-TCAGGTACCGGTGCTGGACTT    744

BSNT_02566___    745 GTGATCATCAGTTCTGTATTTGGGATGCCGGTGCC-CTTGGCGCAAGTCA    793
                     ||.||||||||.|||.|.||||||.|.||.||.|| ||| .|.|||.|||
BPUM_1457___c    745 GTCATCATCAGCTCTATTTTTGGGCTACCTGTTCCACTT-ACCCAAATCA    793

BSNT_02566___    794 CGTCATCGTCTATTATCGGAATAGGCATGGCAAAAAACGGTCCGAACGTG    843
                     |.||.||||||||.||||||.|.||||||||||||...||.||.||..|.
BPUM_1457___c    794 CCTCCTCGTCTATCATCGGACTTGGCATGGCAAAAGGTGGACCTAATATT    843

BSNT_02566___    844 TTCCATAAACAAGTTGTTCAAACGATGCTGAAGGTATGGATCGTATCGCC    893
                     ||.||||||||.||.||..|||..||||||||.||.|||.|.|||||.||
BPUM_1457___c    844 TTTCATAAACATGTGGTGAAAAAAATGCTGAAAGTGTGGGTAGTATCACC    893

BSNT_02566___    894 GTTTTTATC------TTTATCGATTTCTTATCTGCTTGT-ATCCTTGTTT    936
                     .||||||||      |.|||||      |||.||||.|| |.|||| ||.
BPUM_1457___c    894 CTTTTTATCACTTAGTCTATCG------TATTTGCTAGTGAGCCTT-TTC    936

BSNT_02566___    937 TTAAAAGCAGATTATTATTCGATCTTTATCATGGTAAGTGTGCTTTTAGC    986
                     ||||||...||.|||||.||.||||||||||||.|.|||||.||      
BPUM_1457___c    937 TTAAAAAGTGACTATTACTCTATCTTTATCATGATGAGTGTACT------    980

BSNT_02566___    987 GGCGGGC-------GGTGCCGTCAGCCTGACAAAGGCCATTCGTAAA-GA   1028
                      ||..||       |||||..|.||.||||..|||| ||.||..||| ||
BPUM_1457___c    981 -GCTTGCCTCACTTGGTGCGCTAAGTCTGATGAAGG-CAGTCAAAAATGA   1028

BSNT_02566___   1029 GAGACGCTCAGTCCACGAACAAGGCGGGGGAATCTGA   1065
                     |||..||||..|.||.|||||.|||||.||.||.|.|
BPUM_1457___c   1029 GAGCAGCTCGATTCATGAACAGGGCGGCGGGATTTAA   1065


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