Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02577 and BPUM_1465

See Amino acid alignment / Visit BSNT_02577 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:07
# Commandline: needle
#    -asequence dna-align/BSNT_02577___yloC.1.24716.seq
#    -bsequence dna-align/BPUM_1465___yloC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02577___yloC-BPUM_1465___yloC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02577___yloC-BPUM_1465___yloC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02577___yloC
# 2: BPUM_1465___yloC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 936
# Identity:     613/936 (65.5%)
# Similarity:   613/936 (65.5%)
# Gaps:         120/936 (12.8%)
# Score: 1765.5
# 
#
#=======================================

BSNT_02577___      1 ATGATACGAAGTATGACAGGCTTCGG-CAGTGCAAGCAAAACACAAGACG     49
                     ||||||||.||||||||.||.||||| || .||.||.|||||..|.|..|
BPUM_1465___y      1 ATGATACGCAGTATGACGGGATTCGGTCA-AGCGAGTAAAACGGATGGAG     49

BSNT_02577___     50 ATCT--CTCTGTAAGCGTTGAACTTAAATCTGTGAACTACAGATTTAAAG     97
                     |.||  |..|||.|  |||||.||.|||||.||.||..||.|.|||||||
BPUM_1465___y     50 AACTGACAGTGTCA--GTTGAGCTAAAATCGGTCAATCACCGTTTTAAAG     97

BSNT_02577___     98 AAGTGAACGCTCGTTTGCCAAGGC--CTTTGCTATATTTTGAAGATAAGC    145
                     |.||..|.||.||||||||.||||  ||||  |||||||.|||||.|...
BPUM_1465___y     98 AGGTTCATGCCCGTTTGCCGAGGCCGCTTT--TATATTTCGAAGACACAT    145

BSNT_02577___    146 TGAAACAGACCATTCTGCAGCATATTCAGCGCGGAAGAATTGAGCTTTTC    195
                     |.|||.|.|.||||||.|..||..|.|||||.||.|||||||||||.||.
BPUM_1465___y    146 TAAAAAAAATCATTCTTCGTCACGTGCAGCGTGGTAGAATTGAGCTGTTT    195

BSNT_02577___    196 GTATCCG-TTGACAGCGATATGCTTGTTGAGAAA--AGG--CTTG-AAAT    239
                     || |.|| ||||..|||.||..||     ||.||  .||  |||| |.||
BPUM_1465___y    196 GT-TACGATTGAAGGCGGTAAACT-----AGCAAGCCGGTCCTTGCAGAT    239

BSNT_02577___    240 TGATTGGCCGCTGCTCGATGAATTTGTCGCAGCCGCGAGAGATATGAAGA    289
                     .||.|||||||||||.|||||||...|...||||||.|.||||.|..|||
BPUM_1465___y    240 CGACTGGCCGCTGCTTGATGAATACATGAAAGCCGCAAAAGATCTCGAGA    289

BSNT_02577___    290 AACGGTATCA-ATTATC-----TGCAGAACCCGATGTA-ATGGATTTCTT    332
                     |.||.||||| ||| ||     |.|||     .|||.| || ||.||..|
BPUM_1465___y    290 AGCGCTATCACATT-TCAGGCATTCAG-----CATGCACAT-GACTTACT    332

BSNT_02577___    333 TAAGCTTGATCATGTCGTCCAGGTTCATGAAGAA-----CAGACGCAAAA    377
                     |..|||.||.||||.|||.||.||   .||||||     |||.||  |||
BPUM_1465___y    333 TGGGCTAGAGCATGCCGTTCAAGT---AGAAGAATCCGCCAGCCG--AAA    377

BSNT_02577___    378 TGA-CAAGCTGGAGGCGTTGATTATCGATGCTGCAGAAGAAGCGGTAAAA    426
                     ||| ||| .|.|||...|||.|.||.||.|||...|||...||.||.||.
BPUM_1465___y    378 TGAGCAA-TTAGAGCAATTGCTGATGGAAGCTTGTGAAACGGCTGTCAAG    426

BSNT_02577___    427 GGTCTCTGTGAAATGCGTGAAAAAGAGGGG-CTGCTCTT--AGCGAAAGA    473
                     |..||.||....|||.|.||..|.|||||| |..|.|||  |   |||||
BPUM_1465___y    427 GAGCTTTGCTTCATGAGAGAGCAGGAGGGGACATCACTTCAA---AAAGA    473

BSNT_02577___    474 CTG---CCTGATGCATATTGATCAGCTTGAAGAG--CTGGTGAG-AGAAA    517
                     |||   .||||.||.|..|||    .||  ||||  ||....|| |||||
BPUM_1465___y    474 CTGTGAGCTGAGGCTTTCTGA----ATT--AGAGGCCTATACAGAAGAAA    517

BSNT_02577___    518 CTGAATTGCTGGCTGCAGATGTCGTATCTCGTTACCGGGAACGGCTGT--    565
                     ...||.|..|.||..||||.||.||             ||  |.|.||  
BPUM_1465___y    518 TCAAAGTCTTTGCACCAGAGGTTGT-------------GA--GTCAGTAT    552

BSNT_02577___    566 -ACGCCAG----AATCA--------AAGAATGGACTGAAGACGTATTAGA    602
                      |.|.|||    |||||        ||||.|||..||.|||.|...|.||
BPUM_1465___y    553 AAAGACAGGCTCAATCAGCGTTTGCAAGAGTGGGTTGGAGAGGCGCTTGA    602

BSNT_02577___    603 TGAGAGCCGGCTTG-TAACAGA--ATGCGCTATTTTTGCAGACCGCTCTG    649
                     .||.|| |.|.||| .||||||  .||||  ||.|||||.|||||.|.||
BPUM_1465___y    603 CGAAAG-CAGATTGACAACAGAGGCTGCG--ATCTTTGCTGACCGGTGTG    649

BSNT_02577___    650 ATATCACTGAAGAGATTACAAGGCTGAAGAGCCA-TTTCGCCCAGTT---    695
                     |.||.||.|||||||||||.||..||||.||.|| |||| ..||.||   
BPUM_1465___y    650 ACATTACAGAAGAGATTACGAGATTGAAAAGTCACTTTC-AACAATTCCA    698

BSNT_02577___    696 -----TCGTGATATATTAGCTAGTGGCGGAGCTGTCGGGCGCAAACTCGA    740
                          ||.||||      ||.|  |||||.||||.|||..|.|||||.||
BPUM_1465___y    699 GCAAATCTTGAT------GCAA--GGCGGTGCTGCCGGAAGAAAACTTGA    740

BSNT_02577___    741 CTTTCTTGTTCAGGAGCTCAATCGGGAAGCAAATACGATCGGCTCAAAAG    790
                     .||||||||.|||||||||||.||.||||..||.||.||.||||||||||
BPUM_1465___y    741 TTTTCTTGTACAGGAGCTCAACCGTGAAGTGAACACCATTGGCTCAAAAG    790

BSNT_02577___    791 CAAATGATCATCAGATCACAAAGCTTGTCGTTGAAATGAAAAGTTCTATT    840
                     |.||..|||||||..|.||.|||||.||.|||||||||||||||.|||||
BPUM_1465___y    791 CGAACCATCATCATTTAACTAAGCTCGTGGTTGAAATGAAAAGTGCTATT    840

BSNT_02577___    841 GAAAAAATAAAAGAACAAGTGCAAAATATAGAATAG    876
                     ||||||||||||||||||||||||||||||||||||
BPUM_1465___y    841 GAAAAAATAAAAGAACAAGTGCAAAATATAGAATAG    876


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