Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02584 and BPUM_1470

See Amino acid alignment / Visit BSNT_02584 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:08
# Commandline: needle
#    -asequence dna-align/BSNT_02584___priA.1.24716.seq
#    -bsequence dna-align/BPUM_1470___priA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02584___priA-BPUM_1470___priA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02584___priA-BPUM_1470___priA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02584___priA
# 2: BPUM_1470___priA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2554
# Identity:    1748/2554 (68.4%)
# Similarity:  1748/2554 (68.4%)
# Gaps:         281/2554 (11.0%)
# Score: 5730.0
# 
#
#=======================================

BSNT_02584___      1 ATGAATTTTGCCGAAGTCATCGTTGATGTGAGCACCAAAAATATAGACAG     50
                     ||||   ||||.|||||||||||.|||||.|..||.|||...||.||..|
BPUM_1470___p      1 ATGA---TTGCTGAAGTCATCGTAGATGTCACGACGAAAGCCATTGATCG     47

BSNT_02584___     51 GCCTTTTGATTA-----TAAAATCCCAGA-CCATCTCAAGGGCATGATCA     94
                     |||.||.|||||     ||     ||||| |.|| ||||.|...|..|||
BPUM_1470___p     48 GCCATTCGATTACCGTGTA-----CCAGATCGAT-TCAAAGATCTCGTCA     91

BSNT_02584___     95 AAACGGGGATGCGGGTCATTGTTCCGTTTGGCCCCCGTAAGATTCAAGGA    144
                     ||.||||.|||.||||..|.|||||.||||||||..|.|||||||||||.
BPUM_1470___p     92 AAGCGGGAATGAGGGTGGTCGTTCCCTTTGGCCCGAGGAAGATTCAAGGG    141

BSNT_02584___    145 TTTGTGACAGCAGTCAAAGAAGCATCTGACCTATCGGGAAAATCTGTCAA    194
                     |||||||||..|||||||||||.|.|.|||.||     ||||      .|
BPUM_1470___p    142 TTTGTGACAAAAGTCAAAGAAGAAACAGACGTA-----AAAA------CA    180

BSNT_02584___    195 GGAAG--TAGAG---------GGTTTATTAGATCTTA-CACCTGTTCTGA    232
                     |||||  ||.||         |.||||||.||| ||| ||||||||||||
BPUM_1470___p    181 GGAAGCATAAAGGACATTGTCGATTTATTTGAT-TTATCACCTGTTCTGA    229

BSNT_02584___    233 CAGAGGAGCTTATGGATCTGTCATCA-TGGCTGTCAGACAAAACGCTGTC    281
                     ||||.|||||.|||||.||.|| .|| ||||||.|.||.|||||..||||
BPUM_1470___p    230 CAGATGAGCTAATGGAGCTTTC-CCACTGGCTGACGGAAAAAACATTGTC    278

BSNT_02584___    282 TTTTAAAATAACGGCGCTTCAAGCAATGCTGCCTGCCGCCTTAAAGGCGA    331
                     .|.|.|.||||||||.||||||.|.|||.|||||||.|||.|.|||||||
BPUM_1470___p    279 CTATCACATAACGGCACTTCAATCGATGTTGCCTGCAGCCATGAAGGCGA    328

BSNT_02584___    332 AATATGAAAAAGAATTAAAAAT---------TGCACACGGCGCCGATCTT    372
                     |.||||||||||||.|..||.|         ||.|         ||.|||
BPUM_1470___p    329 AGTATGAAAAAGAAATTCAAGTGCTGTCAGATGAA---------GAACTT    369

BSNT_02584___    373 CCGCCGCAAGTGGAACGGCTGTTTACTGAAACAAAGACGCTGTTGTATTC    422
                     ||||.|..|.||.||..||  |||.|.|..|...|||     |.|.||||
BPUM_1470___p    370 CCGCAGTCATTGAAAGAGC--TTTTCGGTCAGCGAGA-----TAGCATTC    412

BSNT_02584___    423 GGATATAC-CCGATCATGATAC-GCTG--------AAACTGATTCAAAGG    462
                        |.||| |.|| |||  |.| ||||        ||||.||||||||.|
BPUM_1470___p    413 ---TTTACGCTGA-CAT--TCCAGCTGAACAACTAAAACAGATTCAAAAG    456

BSNT_02584___    463 CATGTTCAAAAAGGGGACATTGACGTGACGTATAAAGTCGCGCAAAAAAC    512
                     |||||.|||||||||.|..|.||.||.|.||||.|.|||.||||||||.|
BPUM_1470___p    457 CATGTCCAAAAAGGGCATCTAGAGGTAAGGTATCACGTCTCGCAAAAATC    506

BSNT_02584___    513 ---CAATAAAAAAATGGTCAGGCATATTCA---GGCAAATGCGAGTAAAG    556
                        .||.||||||.||..||.||   |.||   .|||..|.||   ||||
BPUM_1470___p    507 TGGAAAGAAAAAAGTGCGCATGC---TCCAACTAGCAGCTTCG---AAAG    550

BSNT_02584___    557 AAGAGCTT---GCTAAGCAG-----GCTGAGGGATTGTCCCGCCAA--GC    596
                     |..|||||   |..||||||     |||||.|.|          ||  ||
BPUM_1470___p    551 ATAAGCTTGAAGAAAAGCAGCAGCAGCTGAAGAA----------AAATGC    590

BSNT_02584___    597 AGCAAAACAGCAGGCGATTCTTCACTTTCT--CATCTCTGAGCCGGAAG-    643
                     .|..|||||..|||| |.|..||.|.||||  |.||          ||| 
BPUM_1470___p    591 GGTCAAACAAAAGGC-ACTGCTCTCCTTCTTGCTTC----------AAGC    629

BSNT_02584___    644 GTGTGAAAATTCCTGCT--GCGGAATTG---TGCA--AAAAAACGGACAC    686
                     |.||||.|...|||..|  |||.||  |   ||||  ||.||||.|.|.|
BPUM_1470___p    630 GAGTGAGACGACCTTTTTAGCGAAA--GACTTGCAGCAACAAACAGGCGC    677

BSNT_02584___    687 GAGCTCTGCAACCATCAAAACCCTTATCCAAAAAGGGCTTTTGAAGGAAA    736
                     |||.|||..|||..|.||||||.|.||.|||.||||.||.||.|..||||
BPUM_1470___p    678 GAGTTCTCAAACGCTTAAAACCTTGATTCAAGAAGGACTGTTAATAGAAA    727

BSNT_02584___    737 GCTATGAAGAGGTTTACAGAGATCCCTATCAGGACAAAATGTTCAAAAAA    786
                     |||||||||||||.|||.|.|||||.||||.||||.....|||      .
BPUM_1470___p    728 GCTATGAAGAGGTCTACCGCGATCCTTATCGGGACCGGGCGTT------T    771

BSNT_02584___    787 ACA---------------GAGCCCCTGCCGCTGACAGACGAACAGAGGGC    821
                     |||               ||.|.|.|||  ||||   ||.|.|||| .||
BPUM_1470___p    772 ACACCTTCTGCCTCACTTGACCTCATGC--CTGA---ACAAGCAGA-AGC    815

BSNT_02584___    822 TGC----------CTTCGAGCCCATACGCGAGACATTG--GACAG---CG    856
                     .||          |.||.|||         ||.||.||  |||.|   ||
BPUM_1470___p    816 GGCAAAACATATTCATCAAGC---------AGTCAGTGATGACCGGCACG    856

BSNT_02584___    857 ATGAGCATAAAGTGTTCCTCCTTCACGGCGTGACAGGAAGCGGAAAAACC    906
                     | ||.|        ||.||.||.|||||.||.|||||||||||.|||||.
BPUM_1470___p    857 A-GACC--------TTTCTGCTGCACGGGGTAACAGGAAGCGGTAAAACG    897

BSNT_02584___    907 GAAATTTATCTGCAATCAATTGAAAAAGTACTGGCGAAAGGAAAAGAAGC    956
                     |||||.|||.||||..|.|||||..|.|..||....||||||||||||||
BPUM_1470___p    898 GAAATATATTTGCAGACGATTGATCATGCTCTTCAAAAAGGAAAAGAAGC    947

BSNT_02584___    957 CATCGTCCTCGTACCGGAAATATCGCTGACGCCGCAAATGG-TCAACCGC   1005
                     .|||||.||.||.||.|||||.|||.|.||.||.||||||| |||| ||.
BPUM_1470___p    948 GATCGTTCTTGTTCCAGAAATCTCGTTAACCCCTCAAATGGTTCAA-CGA    996

BSNT_02584___   1006 TTCAAGGGCCGCTTCGGCTCCCAGGTGGCAGTCATGCACAGCGGTTTATC   1055
                     ||.||.|..||.||.||.||..|.|||||.|||.|.||||||||.|||||
BPUM_1470___p    997 TTTAAAGAACGATTTGGTTCAAATGTGGCTGTCCTTCACAGCGGCTTATC   1046

BSNT_02584___   1056 CACAGGAGAAAAATATGACGAGTGGCGTAAAATCCACCGGAAGGAAGTAC   1105
                     .|||||||||||||||||.||.|||||.|||||||||||.||.|||||..
BPUM_1470___p   1047 GACAGGAGAAAAATATGATGAATGGCGGAAAATCCACCGCAAAGAAGTCA   1096

BSNT_02584___   1106 GGCTTGTCGTCGGTGCCAGATCCGCGATTTTTGCTCCGTTTGAAAATCTA   1155
                     .||||||.||.||.||.|||||.||..||||.||.||.||||||||||||
BPUM_1470___p   1097 AGCTTGTTGTAGGCGCGAGATCGGCAGTTTTCGCACCATTTGAAAATCTA   1146

BSNT_02584___   1156 GGAATGATAATCATCGATGAAGAGCACGAGTCTTCCTATAAACAGGAAGA   1205
                     ||.|||||.|||||.|||||||||||.||.|||||.||||||||.||.||
BPUM_1470___p   1147 GGCATGATTATCATAGATGAAGAGCATGAATCTTCTTATAAACAAGAGGA   1196

BSNT_02584___   1206 AATGCCGCGCTATCATGCGAAAGAGGTGGCAATCAAGCGGGCCGA---GC   1252
                     ||||||.||.||||||||.||.||.||.||.||..|.||.|||.|   ||
BPUM_1470___p   1197 AATGCCTCGTTATCATGCCAAGGACGTCGCCATTGAACGAGCCAAAAGGC   1246

BSNT_02584___   1253 ATCACAGCTGCCCGGTTGTATTAGGGAGTGCTACGCCGACATTAGAGTCA   1302
                     |||   |.||.||.||.||.|||||.|||||.||.||..||.|.||..|.
BPUM_1470___p   1247 ATC---GATGTCCAGTCGTTTTAGGCAGTGCAACCCCTTCACTTGAAACG   1293

BSNT_02584___   1303 TATGCAAGAGCGCAAAAGGGCGT------ATACGAGCTTCTTTCACTGAA   1346
                     ||.||..|.||.|||||.|||||      ||      |.||..|.||.||
BPUM_1470___p   1294 TACGCGCGTGCCCAAAAAGGCGTGTTTACAT------TGCTGACGCTTAA   1337

BSNT_02584___   1347 GCACCGTGTTAACCATCGGGTGATGCCTGAGGTTTCGCTTGTCGATATGA   1396
                     ||||||.||.|||||.|....|.||||..|.||||||.|..|.|||||||
BPUM_1470___p   1338 GCACCGAGTGAACCAGCAAAAGCTGCCGCACGTTTCGTTAATTGATATGA   1387

BSNT_02584___   1397 GAGAGGAGCTTAGAAACGGCAATCGCTCGATGTTTTCAGTTGAATTGAT-   1445
                     ||||.||..|.|||||.||.||..|.||.||||||||||..|||||.|| 
BPUM_1470___p   1388 GAGAAGAATTGAGAAATGGTAACAGGTCTATGTTTTCAGAAGAATTAATG   1437

BSNT_02584___   1446 -----------GGAAAAGCTTG-AAGAAACGATTGCCAAGGGTGAGCAGG   1483
                                ||||..||||| ||||||             .||.||.|
BPUM_1470___p   1438 CTCAGATTAAAGGAAGTGCTTGAAAGAAA-------------AGAACAAG   1474

BSNT_02584___   1484 CGGTGCTGTTTTTAAATAAGAGGGGCTATTCTTCCTTTGTGATGTGCAGG   1533
                     |.||..|.|||.|.|||||.|||||.|||||.|||||||||||||||.|.
BPUM_1470___p   1475 CCGTCTTATTTCTGAATAAAAGGGGTTATTCATCCTTTGTGATGTGCCGT   1524

BSNT_02584___   1534 GATTGCGGCTATGTCCCGCAATGCCCGCACTGCGACATTTCCATGACGTA   1583
                     ||||||||.|||||...|||||||||.||.|||||.|||||..|.||.||
BPUM_1470___p   1525 GATTGCGGATATGTGGAGCAATGCCCCCATTGCGAAATTTCTCTCACCTA   1574

BSNT_02584___   1584 TCATCGTTACGGCCAAA---GGCTGAAATGCCATTATTGCGGACATGAAG   1630
                     |||.||.||   .||||   |.||||||||||||||||||||.||.||||
BPUM_1470___p   1575 TCACCGCTA---TCAAAAACGTCTGAAATGCCATTATTGCGGTCACGAAG   1621

BSNT_02584___   1631 AGCCTGTTCC-GCACACTTGTCCTGAATGCGCA-AGCGAGCATATCCGCT   1678
                     ..||.||.|| |.|.| .|||||.|||||| || ||.||||||||.||||
BPUM_1470___p   1622 CACCAGTGCCAGAAGA-ATGTCCAGAATGC-CATAGTGAGCATATTCGCT   1669

BSNT_02584___   1679 TTTTCGGAACGGGAACACAGCGAGTGGAGGAAGAGCTGACAAAAGTGCTG   1728
                     .|||.||.|||||.||.|||||.||.||.|||||||||||||||||.|||
BPUM_1470___p   1670 ATTTTGGTACGGGTACGCAGCGTGTAGAAGAAGAGCTGACAAAAGTACTG   1719

BSNT_02584___   1729 CCA-AGTGCGAGAGTGATTCGGATGGATGTTGACACGACATCACGGAAAG   1777
                     ||| || ||.|||||.|||||.||||||||.||.||.||.||.||.||||
BPUM_1470___p   1720 CCAGAG-GCAAGAGTCATTCGAATGGATGTGGATACAACGTCTCGTAAAG   1768

BSNT_02584___   1778 GCGCCCATGAAAAATTACTGTCAGCTTTCGG--AGAAGGAAAAGCGGATA   1825
                     |.||.|||||||||.|.||..||.||||..|  |.||  |.|||||||.|
BPUM_1470___p   1769 GTGCTCATGAAAAACTCCTTACATCTTTTAGCAATAA--AGAAGCGGACA   1816

BSNT_02584___   1826 TTCTT-CTCGGAACGCAAATGATCGCGAAAGGGCTTGATTTTCCGAATGT   1874
                      |||| |||||.|||||.|||||.||.||||||.|.|||||.||..||||
BPUM_1470___p   1817 -TCTTGCTCGGGACGCAGATGATTGCAAAAGGGTTAGATTTCCCAGATGT   1865

BSNT_02584___   1875 CACGCTTGTCGGAGTGTTAAGTGCTGATACAACACTTCATATTCCTGATT   1924
                     |||.|||||.|||||..|||||||.|||||..|.||||||||||||||||
BPUM_1470___p   1866 CACACTTGTTGGAGTTCTAAGTGCGGATACGTCTCTTCATATTCCTGATT   1915

BSNT_02584___   1925 TCAGATCGGCTGAAAAAACATTTCAGCTGTTAACGCAAGTCAGCGGCCGG   1974
                     ||.|.||...|||||||||||||||||||.|.|||||.|||||||||.||
BPUM_1470___p   1916 TCCGTTCAAGTGAAAAAACATTTCAGCTGCTCACGCAGGTCAGCGGCAGG   1965

BSNT_02584___   1975 GCAGGCAGGCATGAAAAGCCCGGCCATGTCATCATTCAAACGTATACACC   2024
                     |||||..|.||||||||..|.|||..|||||||||||||.|||||||.||
BPUM_1470___p   1966 GCAGGACGACATGAAAAAGCGGGCTCTGTCATCATTCAATCGTATACGCC   2015

BSNT_02584___   2025 GTCTCATTACAGTATCCAGCTGACGAAAACA-CACGATTATGAAACGTTC   2073
                     .|||||.||.|||||..|..|.||| ||.|| ||.||.||.|||.|.||.
BPUM_1470___p   2016 TTCTCACTATAGTATTGAATTAACG-AAGCAGCATGACTACGAAGCCTTT   2064

BSNT_02584___   2074 TATCAGCATGAAATGGCGCACAGGAGAGAGCAATCCTATCCGCCATACTA   2123
                     |||.|.||.||.|||..|||..|..|..|.||.||.||||||||.||.||
BPUM_1470___p   2065 TATGAACAGGAGATGCTGCATCGCCGCCACCAGTCTTATCCGCCGTATTA   2114

BSNT_02584___   2124 CTATTTGGCTCTTGTGACTGTTTCTCATGAGGAAGTGGCGAAAGCAGCG-   2172
                     ||.||||||..|.||||||||.||.|||||.||.|||.|.||.|||||| 
BPUM_1470___p   2115 CTTTTTGGCGATGGTGACTGTATCACATGAAGATGTGACAAAGGCAGCGC   2164

BSNT_02584___   2173 --GTTACAGCTGAAAAAATCGCTCATTTTTTGAAAGCAAACTGCGGAGCT   2220
                       ||.|   |.||..||||.|.|||.|||.|.|||...|||||.|.|.|.
BPUM_1470___p   2165 ATGTCA---CGGATCAAATTGTTCAGTTTCTAAAAATGAACTGTGCACCG   2211

BSNT_02584___   2221 GACACGAAAATTCTCGGACCAAGC-GCGTCGCCGATAGCCAGGATCAAAG   2269
                     .|.||.|.|||.||.||.|| .|| ||.||.||.||.||.|.||||||||
BPUM_1470___p   2212 AATACAAGAATCCTTGGTCC-GGCTGCATCACCAATCGCTAAGATCAAAG   2260

BSNT_02584___   2270 ATAGATATCGCTATCAATGCGTGATAAAATACAAACAGGAAACCCAGTTA   2319
                     ||||||||||.||||||||||||||||||||||||..||||    |.|.|
BPUM_1470___p   2261 ATAGATATCGATATCAATGCGTGATAAAATACAAAAGGGAA----AATGA   2306

BSNT_02584___   2320 TCTG----CTTTATTGAAGAAGATACTGGAACATTAT-AAACGCGAAATT   2364
                     .|||    .||||.|...|||.||||..||.|||||| |||.| |||||.
BPUM_1470___p   2307 ACTGGCAAGTTTACTACGGAAAATACAAGATCATTATCAAAAG-GAAATG   2355

BSNT_02584___   2365 GAACAAAAACATGTAATGATTTCAATTGATATGAATCCTTATATGATGAT   2414
                     |||||||||||..|.|||||||||||.|||||||||||.|||||||||||
BPUM_1470___p   2356 GAACAAAAACAATTGATGATTTCAATAGATATGAATCCATATATGATGAT   2405

BSNT_02584___   2415 GTAA   2418
                     ||||
BPUM_1470___p   2406 GTAA   2409


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