Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02585 and BPUM_1471
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:08
# Commandline: needle
# -asequence dna-align/BSNT_02585___def.1.24716.seq
# -bsequence dna-align/BPUM_1471___def.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02585___def-BPUM_1471___def.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02585___def-BPUM_1471___def.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02585___def
# 2: BPUM_1471___def
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 514
# Identity: 347/514 (67.5%)
# Similarity: 347/514 (67.5%)
# Gaps: 62/514 (12.1%)
# Score: 1113.0
#
#
#=======================================
BSNT_02585___ 1 TTGGCAGTAAAA--AAGGTCGTCACACATCCTGCGGAGGTTTTGGAAACA 48
.||||||||||| || |.||||.||||||.||.||.||..|.| ||||
BPUM_1471___d 1 GTGGCAGTAAAACCAA--TAGTCATACATCCGGCAGAAGTACTCG-AACA 47
BSNT_02585___ 49 CCTGCGGAAA--CCGTGACTGT------TTTTGATAAAAAGCTAAAAAAA 90
||| |.|.|.|||| .||.|||||||||||.|||||.
BPUM_1471___d 48 -------AAAGGCAGAGTCTGTCGATACGTTCGATAAAAAGCTTAAAAAG 90
BSNT_02585___ 91 CTGCTTGATGATATGTACGACACCATGCTTGAAATGGATGGTGTCGGACT 140
||.||||||||||||||.||.||.||||||||..|.||.||.||||||||
BPUM_1471___d 91 CTACTTGATGATATGTATGATACAATGCTTGAGCTAGACGGAGTCGGACT 140
BSNT_02585___ 141 GGCAGCGCCGCAAATCGGCATTTTAAAAAGAGCGGCCGTTGTAGATATCG 190
.|||||.||.|||||.|||||||.|.|||||...||.|||||.|||||||
BPUM_1471___d 141 AGCAGCACCACAAATTGGCATTTCACAAAGAATTGCTGTTGTTGATATCG 190
BSNT_02585___ 191 GGGATGACAGA----GGGAGAATTGATCTCGTTAATCCTGAAATTTTAGA 236
|.|| ||| ||.|||||||||.|.||.|||||.||..||.|.||
BPUM_1471___d 191 GTGA----AGAATCTGGCAGAATTGATTTAGTGAATCCCGAGGTTCTTGA 236
BSNT_02585___ 237 AAGAAGCGGCGAG-CAAACCGGAATTGAAGGATGCTTGAGCTTTCC---- 281
|..||..|| .|| |||||.|..||||||||.|||.||||||||||
BPUM_1471___d 237 AGTAAAAGG-AAGTCAAACAGATATTGAAGGCTGCCTGAGCTTTCCATCT 285
BSNT_02585___ 282 TGGCGTCTATGGTGATGT--------CAAACGTGCCGATTATGTCAAAGT 323
| |.||.|||...|| |||.| |||||.||.||
BPUM_1471___d 286 T----TATACGGTACAGTAGAAAGACCAAGC--------TATGTGAAGGT 323
BSNT_02585___ 324 GCGTGCGTTTAACCGTCAG---GGAAAACCGTTCATTCTGGAAGCGCGAG 370
....||.|||.| |.|| ||.|||||.||.|...|.|||||...||
BPUM_1471___d 324 AAAAGCCTTTGA---TAAGAAAGGCAAACCATTTACAATAGAAGCAGAAG 370
BSNT_02585___ 371 GCTTTTTAGCAAGAGCCGTGCAGCATGAAATGGACCACTTAGACGGTGTG 420
|.||||||||||||||..|...|||.|||||.||.||.||||||||..|.
BPUM_1471___d 371 GATTTTTAGCAAGAGCTTTATTGCACGAAATTGATCATTTAGACGGCATA 420
BSNT_02585___ 421 CTGTTTACATCTAAAATAAGTAAATAC-TATACAGAAGATGAACTAGCGG 469
.|.|||||.||.|||||.|.|.|| || |||||||||.|.||||||||||
BPUM_1471___d 421 TTATTTACGTCGAAAATCATTCAA-ACTTATACAGAAAAAGAACTAGCGG 469
BSNT_02585___ 470 ATATGGAAGGATGA 483
|.||||||||.|||
BPUM_1471___d 470 AAATGGAAGGGTGA 483
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