Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02586 and BPUM_1472

See Amino acid alignment / Visit BSNT_02586 in genome browser / Return to Orthologue table 
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:08
# Commandline: needle
#    -asequence dna-align/BSNT_02586___fmt.1.24716.seq
#    -bsequence dna-align/BPUM_1472___fmt.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02586___fmt-BPUM_1472___fmt.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02586___fmt-BPUM_1472___fmt.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02586___fmt
# 2: BPUM_1472___fmt
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 994
# Identity:     683/994 (68.7%)
# Similarity:   683/994 (68.7%)
# Gaps:          80/994 ( 8.0%)
# Score: 2185.0
# 
#
#=======================================

BSNT_02586___      1 ATGACGAGAATCGTATTTATGGGAACGCCGGATTTTTCAGTTCCTGTTTT     50
                     |||.|..|.||.||||||||||||||.||.|||||.|||||.|||||..|
BPUM_1472___f      1 ATGGCACGTATTGTATTTATGGGAACCCCTGATTTCTCAGTACCTGTGCT     50

BSNT_02586___     51 AAGAACCCTGATTGAGGACGGATATGAAGTAGTGGGGGTCGTCACACAGC    100
                     ...|||.||.||....||.|||||.|||||.||.|||||||||||.||.|
BPUM_1472___f     51 GCAAACACTCATAACAGAAGGATACGAAGTCGTCGGGGTCGTCACGCAAC    100

BSNT_02586___    101 CGGACCGTCCGAAGGGCAGAAAAAAAGTCATGACACCTCCTCCGGTCAA-    149
                     |.||.||.|||||.|||||||||..|||..|.||.||.|||||.||.|| 
BPUM_1472___f    101 CAGATCGCCCGAAAGGCAGAAAACGAGTTCTCACGCCGCCTCCTGTGAAA    150

BSNT_02586___    150 --GGAAG-----AGGCATTGCGTCACGGCATCCCGGTTCTT-CAGCCGGA    191
                       |||||     |.||||        |||||.|||| |||| |||||.||
BPUM_1472___f    151 GTGGAAGCCTTAAAGCAT--------GGCATTCCGG-TCTTGCAGCCTGA    191

BSNT_02586___    192 AAAAGT-CAGATTGACAGAAGAAATTGAGAAAGTGCTGGCATTAAAGCCT    240
                     |||.|| |...|||| .|||||||||||.|||||.||.|||.|||||||.
BPUM_1472___f    192 AAAGGTACGTCTTGA-TGAAGAAATTGATAAAGTCCTTGCACTAAAGCCG    240

BSNT_02586___    241 GACCTGATTGTAACGGCGGCATTCGGACAAATTTTGCCTAAA-GAGCTTC    289
                     ||..|.|||||.|||||||||||.|||||||||.|.||.||| || ||.|
BPUM_1472___f    241 GATTTAATTGTCACGGCGGCATTTGGACAAATTCTACCAAAACGA-CTGC    289

BSNT_02586___    290 TCGACAGTCCAAAGTACGGCTGCATTAACGTTCACGCATCCCTTTTGCCG    339
                     |.||....||..|||..|||||.||.||.||.||.||.||.||..|.||.
BPUM_1472___f    290 TGGATGAACCTCAGTTTGGCTGTATCAATGTACATGCCTCACTGCTCCCA    339

BSNT_02586___    340 GAACTGCGCGGCGGTGCTCCGATTCATTATTCCATTCTGCAGGGAAAGAA    389
                     |||||..|.||.||.||.|||||.||||||.|.||.||.||.||.||.||
BPUM_1472___f    340 GAACTAAGAGGGGGCGCGCCGATCCATTATGCGATCCTTCAAGGTAAAAA    389

BSNT_02586___    390 GAAAACCGGGGTTACCATTATGTATATGGTAGAAAAATTGGATGCGGGCG    439
                     ||||||.||.|||||.||||||||.|||||.|||..|.|.|||||.||.|
BPUM_1472___f    390 GAAAACAGGCGTTACGATTATGTACATGGTGGAACGACTTGATGCAGGGG    439

BSNT_02586___    440 ATATGATCTCAAAAGTGGAAGTGGACATTGAAGAAACCGACAATGTCGGA    489
                     ||||||||...|||||.||||||||.||.||.|||...|||||||||||.
BPUM_1472___f    440 ATATGATCAGTAAAGTAGAAGTGGAAATCGATGAATTAGACAATGTCGGT    489

BSNT_02586___    490 ACACTGCACGATAAATTAAGCGCGGCTGGCGCGAAGCTATTGTCAGAAAC    539
                     |||.||||.||.||||||||.|..||.||.||....||||||..|||.||
BPUM_1472___f    490 ACATTGCATGACAAATTAAGTGTAGCAGGTGCTGCCCTATTGAAAGATAC    539

BSNT_02586___    540 GGTTCCAAACGTTATTGCCGGCAGC-ATTTCACCTGAAAA----GCAGGA    584
                     .||.||.||.|||.|...||| |.| |||||.||    ||    |||..|
BPUM_1472___f    540 TGTGCCGAATGTTCTGAGCGG-ATCTATTTCGCC----AATTCCGCAAAA    584

BSNT_02586___    585 TGAAGAGAAAGCGACATACGCGCCTAACATTAAAAGAGAGCAAGAGCTGC    634
                     ||||||....||.||.|||||.|||||.||.||..|||||||.||...|.
BPUM_1472___f    585 TGAAGATGCCGCAACGTACGCACCTAATATAAAGCGAGAGCAGGAAAGGT    634

BSNT_02586___    635 TCGACTGGTCCAGAACGGGCGAAGAGCTTTACAACCAGATCCGCGGCTTA    684
                     |.||||||.|.|..||.||.|||||||||||||||||..|.|||||||||
BPUM_1472___f    635 TAGACTGGACAAAGACCGGTGAAGAGCTTTACAACCAAGTTCGCGGCTTA    684

BSNT_02586___    685 AATCCATGGCCTGTTGCCTATACGACGCTTAATGGACAAAAC--------    726
                     |||||||||||.||||||||||     ||.|||||    |||        
BPUM_1472___f    685 AATCCATGGCCAGTTGCCTATA-----CTGAATGG----AACGGGGCTCA    725

BSNT_02586___    727 -TTGAAAGTGTGGGAATCCAAAAAAA----CACCCGCA--CCAACCA-AA    768
                      .|.|||||.|||||| .||||||||    |||.||.|  .|||..| ||
BPUM_1472___f    726 TCTAAAAGTATGGGAA-GCAAAAAAAGTTCCACTCGAAGTGCAAGAAGAA    774

BSNT_02586___    769 GCTGAGCCAGGCACAGTCGTTGCGGTTGAAAAGGAAGG----GATTATCG    814
                     |||      ||.|.|||..|||.|.||.||||.|||||    |    ||.
BPUM_1472___f    775 GCT------GGGAAAGTGATTGAGCTTCAAAAAGAAGGTCCAG----TCA    814

BSNT_02586___    815 TTGCCACAGG---TAACGAGACGGCTCTGTTATTAACCGAACTCCAGCCG    861
                     |||..||.||   |||  |.|.||| ||..|||||||.|...|.|||||.
BPUM_1472___f    815 TTGGAACTGGGAATAA--ACAGGGC-CTTCTATTAACAGGTGTACAGCCA    861

BSNT_02586___    862 GCAGGCAA-AAAACGAATGAAAGGCGAAGACTTTGTGCGAGGCGCTCATG    910
                     ||.||.|| ||||.| ||||..|||||||||||..|..|||||||..||.
BPUM_1472___f    862 GCTGGTAAGAAAAAG-ATGAGCGGCGAAGACTTCCTAAGAGGCGCAAATA    910

BSNT_02586___    911 TTGAAGTCGGTGATGTGTTAGGAGTAAACAATGAAAAAAACTAG    954
                     |.|||.|.||..|....|||||..|||..||||||.||||.||.
BPUM_1472___f    911 TCGAAATTGGACAGAAATTAGGGTTAATGAATGAAGAAAAGTAA    954


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