Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02589 and BPUM_1475

See Amino acid alignment / Visit BSNT_02589 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:09
# Commandline: needle
#    -asequence dna-align/BSNT_02589___prpC.1.24716.seq
#    -bsequence dna-align/BPUM_1475___prpC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02589___prpC-BPUM_1475___prpC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02589___prpC-BPUM_1475___prpC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02589___prpC
# 2: BPUM_1475___prpC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 834
# Identity:     531/834 (63.7%)
# Similarity:   531/834 (63.7%)
# Gaps:         132/834 (15.8%)
# Score: 1555.0
# 
#
#=======================================

BSNT_02589___      1 ---TTGTTAA---CAGCCTTAAAAACAGATACAGGAAAAATCCGCCAGCA     44
                        |||.|||   |||||||....||.||||||||||||.||||.|||||
BPUM_1475___p      1 ATGTTGATAAGGGCAGCCTTTCTTACCGATACAGGAAAAGTCCGTCAGCA     50

BSNT_02589___     45 TAATGAAGATGATGCGGGGATATTCAAGGGGAAAGATGAATTTA-TATTA     93
                     |||||||||||||||.||.||.||..|.|..|||||.| |||.| |..|.
BPUM_1475___p     51 TAATGAAGATGATGCAGGTATTTTTGAAGCAAAAGAAG-ATTCACTTCTC     99

BSNT_02589___     94 GCGGTTGTCGCTGATGGCATGGGCGGCCATCTTGCTGGAGATGTTGCGAG    143
                     ||.|||||.||.||.||||||||.||.|||||||||||.|||||.||.||
BPUM_1475___p    100 GCTGTTGTAGCAGACGGCATGGGAGGTCATCTTGCTGGTGATGTCGCCAG    149

BSNT_02589___    144 CAAGATGG---------CTGTGAAAGCCAT--GGGGGAGAAA----TGGA    178
                     ||||||||         ||.|.|||| .||  .|||.|||||    |..|
BPUM_1475___p    150 CAAGATGGCAGTCTCTTCTTTAAAAG-AATACTGGGAAGAAACATCTTCA    198

BSNT_02589___    179 AT------GAAGCAGAGACGATTCCAA-----CTGCGCCCTCGG--AATG    215
                     ||      .|||| .||.||||  |||     ||        ||  |||.
BPUM_1475___p    199 ATTCCAGAAAAGC-CAGCCGAT--CAAGAAAGCT--------GGTTAATC    237

BSNT_02589___    216 TGAAAAATGGCTCATTGAACAGATTCTTTCGGTAAACAGCAAAATATACG    265
                     |.|||||    |||.|||           |..|||..|.| ||.|.||.|
BPUM_1475___p    238 TCAAAAA----TCAGTGA-----------CATTAATGATC-AAGTTTATG    271

BSNT_02589___    266 ATCATGCTCAAGCCCACGAAGAATGCCAAGGCATGGGGACGACGATTGTA    315
                     |.|||||.|||..|.|.||.||.||||||||.|||||||||||.||||||
BPUM_1475___p    272 AACATGCGCAAAACAATGAGGAGTGCCAAGGAATGGGGACGACCATTGTA    321

BSNT_02589___    316 TGTGCACT------TTTTACGGGGAAAACGGTTTCTGTTGCCCATATCGG    359
                     ||.|||||      |||      |.|||||||..|..||||.|||||.||
BPUM_1475___p    322 TGCGCACTCGTTCATTT------GCAAACGGTCACAATTGCGCATATTGG    365

BSNT_02589___    360 AGACAGCAGATGCTATTTGCTTCAGGACGATGATTTCGTT----CAAGTG    405
                     |||||||.|.|||||.|||||  |.||..|.||  .||.|    |||.|.
BPUM_1475___p    366 AGACAGCCGCTGCTACTTGCT--AAGAGAAGGA--GCGCTCACCCAATTA    411

BSNT_02589___    406 ACAGAAGACCATTCGCTTGTAAATGAACTGGTTCGCACTGGAGAGATCTC    455
                     |||||.||.|||||.||.||.||.||.||.||....||.||.||.||.||
BPUM_1475___p    412 ACAGATGATCATTCACTCGTGAACGAGCTTGTGAAAACAGGTGAAATTTC    461

BSNT_02589___    456 CAGAGAAGACGCTGAACATCATCCGCGAAAAAATGTGTTGACGAAGGCGC    505
                     .|.||..||.||.|||.|||||||..|||||||||||.|.|||||.||..
BPUM_1475___p    462 AAAAGCGGATGCAGAATATCATCCAAGAAAAAATGTGCTCACGAAAGCAT    511

BSNT_02589___    506 TTGGAACAG----ACCAGTCAGTCAGTATTGACACCCGTTCCTTTGATAT    551
                     |.|||||||    ||..||   ||| .|||||..|.||..|.|||||..|
BPUM_1475___p    512 TAGGAACAGATAAACGTGT---TCA-AATTGATGCACGCACTTTTGAGGT    557

BSNT_02589___    552 AGAACCCGGAGA-CAAA--CTGCTTCTATGTTCTGACGGACTGACGAATA    598
                     .||.||.||||| ||||  ||||||   ||.||.||.||.||..||||||
BPUM_1475___p    558 GGACCCAGGAGATCAAATTCTGCTT---TGCTCAGATGGTCTATCGAATA    604

BSNT_02589___    599 AAGTGGAAGGCACTGAGTTAAAAGA--------CATCCT-----GCAAAG    635
                     ||||.||||          ||.|||        |||..|     ||||| 
BPUM_1475___p    605 AAGTAGAAG----------AAGAGAATTTGATTCATATTTTAACGCAAA-    643

BSNT_02589___    636 CGATTCAGCTCCTCAGGAAAAAGTAAACCTGCTTGTGGACAA--AGCCAA    683
                     |.|  |.||.||..||||||||||||  |.|..|....||||  |||.||
BPUM_1475___p    644 CAA--CCGCACCAGAGGAAAAAGTAA--CAGAGTTAATACAAACAGCGAA    689

BSNT_02589___    684 TCAGAACGGCGGAGAAGACAACATCACAGCAGTTTTGCTTGAGCTTGCTT    733
                     |.|.||||||||.|||||.|||||.||||||||..||.|.||..|..|.|
BPUM_1475___p    690 TGACAACGGCGGTGAAGATAACATTACAGCAGTACTGTTAGAAATCTCCT    739

BSNT_02589___    734 TACAAGTTGAAGAGGGTGA-AGATC-AGTGCTAA    765
                     ..||....||.|||||||| ||  | ||||.|.|
BPUM_1475___p    740 CCCAGCCAGAGGAGGGTGACAG--CAAGTGTTGA    771


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02589 and BPUM_1475

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
