Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_02596 and BPUM_1481

See Amino acid alignment / Visit BSNT_02596 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:09
# Commandline: needle
#    -asequence dna-align/BSNT_02596___rpmB.1.24716.seq
#    -bsequence dna-align/BPUM_1481___rpmB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02596___rpmB-BPUM_1481___rpmB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02596___rpmB-BPUM_1481___rpmB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02596___rpmB
# 2: BPUM_1481___rpmB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 189
# Identity:     167/189 (88.4%)
# Similarity:   167/189 (88.4%)
# Gaps:           0/189 ( 0.0%)
# Score: 747.0
# 
#
#=======================================

BSNT_02596___      1 ATGGCACGTAAATGCGTTATCACAGGTAAAAAAACAACAGCTGGGAATAA     50
                     ||||||||||||||||||||.|||||.|.||||||||.|||||||||.||
BPUM_1481___r      1 ATGGCACGTAAATGCGTTATTACAGGCAGAAAAACAAAAGCTGGGAACAA     50

BSNT_02596___     51 CCGTTCTCACGCAATGAACGCTTCTAAGCGCACTTGGGGCGCGAATCTTC    100
                     .||||||||||||||||||.||.|.||.||.||.|||||||||||.||||
BPUM_1481___r     51 TCGTTCTCACGCAATGAACTCTACAAAACGTACATGGGGCGCGAACCTTC    100

BSNT_02596___    101 AAAAGGTTCGTATCCTTGTGAACGGAAAACCTAAAAAAGTATATGTATCT    150
                     ||||.||||||||.||.|||.||||.||.|||||||.||||||||||||.
BPUM_1481___r    101 AAAAAGTTCGTATTCTAGTGGACGGTAAGCCTAAAAGAGTATATGTATCA    150

BSNT_02596___    151 GCTCGAGCTTTGAAATCCGGTAAAGTTGAGCGTGTATAA    189
                     |||||||||||||||||.|||||||||||||||||||||
BPUM_1481___r    151 GCTCGAGCTTTGAAATCTGGTAAAGTTGAGCGTGTATAA    189


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.