Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02604 and BPUM_1488

See Amino acid alignment / Visit BSNT_02604 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:10
# Commandline: needle
#    -asequence dna-align/BSNT_02604___plsX.1.24716.seq
#    -bsequence dna-align/BPUM_1488___plsX.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02604___plsX-BPUM_1488___plsX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02604___plsX-BPUM_1488___plsX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02604___plsX
# 2: BPUM_1488___plsX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1040
# Identity:     724/1040 (69.6%)
# Similarity:   724/1040 (69.6%)
# Gaps:          79/1040 ( 7.6%)
# Score: 2395.5
# 
#
#=======================================

BSNT_02604___      1 ATGAGAATAGCTGTAGATGCAATGGGAGGAGACCACGCTCCCAAAGCTGT     50
                     ||||||||.||.||.|||||||||||.||||||||.||.||.|||||..|
BPUM_1488___p      1 ATGAGAATTGCAGTCGATGCAATGGGGGGAGACCATGCCCCTAAAGCCAT     50

BSNT_02604___     51 TATTGACGGAGT-TATAAAAGGTATAGAGGCATTTGATGATCTCCATATC     99
                     |||||||||.|| .|.|||||.| ||..|||||||...|||.|..|.||.
BPUM_1488___p     51 TATTGACGGTGTGCAAAAAAGCT-TAACGGCATTTTCAGATATTGAGATT     99

BSNT_02604___    100 ACACTTGTCGGTGACAAAACAACGATAGAATCA---CAT--TTAACAACT    144
                     |||||||||||.||..|||     .||.|||||   |||  .||||||  
BPUM_1488___p    100 ACACTTGTCGGCGATGAAA-----GTAAAATCAAACCATACATAACAA--    142

BSNT_02604___    145 ACATCAGATCGCATCACGGTGCTGCACGCAGATGAAGTGATTGAGCCTAC    194
                     |||.| ||.|||||||||.|..|..|.|||.|.|||||.|||||.||.||
BPUM_1488___p    143 ACAAC-GAGCGCATCACGATTTTAGATGCAAAAGAAGTCATTGAACCGAC    191

BSNT_02604___    195 GGATGAACCTGTCCGTGCCGTGCGAAGAAAAAAGAACTCATCTATGGTTC    244
                     .||||||||.||.|||||.||..|..|.||||||.|.|||||||||||..
BPUM_1488___p    192 AGATGAACCAGTGCGTGCAGTTAGGCGTAAAAAGGATTCATCTATGGTGA    241

BSNT_02604___    245 TTATGGCGCAGGAGGT-TGCGGAAAACAGAGCTGACGCCTGCATTTCAGC    293
                     ..||||||||.||.|| |.||.|..|| ||||.||.|||||.||||||||
BPUM_1488___p    242 AAATGGCGCAAGAAGTATCCGAAGGAC-GAGCAGATGCCTGTATTTCAGC    290

BSNT_02604___    294 AGGAAATACCGGTGCATTAATGACAGCCGGTCTCTTTATTGTCGGAAGAA    343
                     ||||||.||.||.|||.|.||||||||.||.||.|||||.||.|||||||
BPUM_1488___p    291 AGGAAACACTGGCGCACTTATGACAGCAGGACTGTTTATCGTAGGAAGAA    340

BSNT_02604___    344 TTAAAGGAATTGACCGTCCGGCGCTTGCCCCGACACTTCCGAC---TGTT    390
                     ||.|.||.||.||..|.||.||||||||.||||||||.||.||   ||.|
BPUM_1488___p    341 TTGATGGCATCGATAGACCAGCGCTTGCTCCGACACTGCCAACACTTGAT    390

BSNT_02604___    391 TCGGGAGACGGATTTCTTCTCCTTGATGTCGGCGCCAATGTCGATGCCAA    440
                       ||.|| |||.|||.|..|.||.||||||||.||.||.||.||||||||
BPUM_1488___p    391 --GGCAG-CGGTTTTTTATTACTAGATGTCGGTGCTAACGTTGATGCCAA    437

BSNT_02604___    441 ACCGGAGCACCTCGTTCAATATGCCATCATGGGTTCTGTTTATTCTCAGC    490
                     |||.||.|||||.||.||||||||.||.||||||||..||||..|..|||
BPUM_1488___p    438 ACCAGAACACCTTGTGCAATATGCGATGATGGGTTCAATTTACGCAGAGC    487

BSNT_02604___    491 AAGTGCGCGGTGTCACTTCA---------CCGAGAGTCGGACTTTTAAAT    531
                              ||||...|.||         |||.|.||.|||.|.||||||
BPUM_1488___p    488 ---------GTGTTTTTCCAAAGAGTAATCCGCGTGTAGGATTGTTAAAT    528

BSNT_02604___    532 GTCGGAACAGAAGATAAAAAAGGAAACGAACTGACGAAGCAGACGTTTCA    581
                     ||.||||||||||||||||||||.|||||.||.|||||..|.||.|||.|
BPUM_1488___p    529 GTAGGAACAGAAGATAAAAAAGGCAACGATCTCACGAAAAAAACCTTTGA    578

BSNT_02604___    582 AATTTTAAAAGAAACAGCAAACATCAATTTTATCGGAAACGTGGAAGCGC    631
                     |.|.|||||||   ||.||.||.|.|||||..|.|||||.|||||..|.|
BPUM_1488___p    579 ATTGTTAAAAG---CATCAGACTTGAATTTCGTAGGAAATGTGGAGTCTC    625

BSNT_02604___    632 GAGACCTTTTAGATGATGTGGCGGATGTTGTAGTAACAGACGGCTTTACC    681
                     |.|||.|.|||||.|.|||.||.||.||.||.||.|||||.||.||.||.
BPUM_1488___p    626 GTGACTTATTAGAAGGTGTAGCTGACGTCGTTGTCACAGATGGTTTCACA    675

BSNT_02604___    682 GGGAATGTTACACTCAAAACGCTGGAAGGCTCTGCGTTGTCTATTTTTAA    731
                     ||.|||.|..|.||.||||||.|.||||||.|.||..|.|||.|.|||||
BPUM_1488___p    676 GGAAATATCGCTCTGAAAACGATTGAAGGCACAGCTCTTTCTGTATTTAA    725

BSNT_02604___    732 AATGATGAGAGACGTAATGACGTCTACTTTGACATCCAAGCTT----GC-    776
                     ||||.|||.|||            .||.||.|||||| |||||    || 
BPUM_1488___p    726 AATGCTGAAAGA------------AACCTTAACATCC-AGCTTCACAGCA    762

BSNT_02604___    777 -----AGCAGCTG---TGCTGAAGCCAAAATTGAAAGAAATGAAAATGAA    818
                          |||.||||   ||.|||||||.|||||||...|.||||||...||
BPUM_1488___p    763 AAAATAGCGGCTGGTATGATGAAGCCGAAATTGATGCAGATGAAATCCAA    812

BSNT_02604___    819 TATGGAGTA-TTCGAATTATGGCGGAGCAAGTCTTTTTGGCTTAAAAGCG    867
                     .|||||.|| |.|||| |||||.||.||...|.|.|||||.||||||||.
BPUM_1488___p    813 AATGGATTACTCCGAA-TATGGTGGTGCCGCTTTATTTGGTTTAAAAGCA    861

BSNT_02604___    868 CCTGTGATCAAGGCGCACGGCTCTTCAGATTCAAATGCTGTATTCCATGC    917
                     |||||.||.||.||||||||.||.||.|||..|||.||..|.||.|||||
BPUM_1488___p    862 CCTGTCATTAAAGCGCACGGTTCCTCTGATGAAAACGCCATTTTTCATGC    911

BSNT_02604___    918 GATTCGGCAAGCAAGAGAGATGGTCAGCCAAA-ATGTGGCTGCGCTCATT    966
                     .|||||.||.|||.|.||.||.|| ||..||| |.||..|.||..|||||
BPUM_1488___p    912 CATTCGTCAGGCACGTGATATCGT-AGAAAAAGACGTTTCAGCCATCATT    960

BSNT_02604___    967 CAGGAAGAAGTGAAAGAAGAAAAAACAGATGAGT----AG   1002
                     ||..|||||||..||.||||||..||..|.||||    | 
BPUM_1488___p    961 CATCAAGAAGTCCAAAAAGAAACCACGAACGAGTCTTAA-    999


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