Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02616 and BPUM_1498

See Amino acid alignment / Visit BSNT_02616 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:12
# Commandline: needle
#    -asequence dna-align/BSNT_02616___ylqC.1.24716.seq
#    -bsequence dna-align/BPUM_1498.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02616___ylqC-BPUM_1498.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02616___ylqC-BPUM_1498.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02616___ylqC
# 2: BPUM_1498
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 264
# Identity:     184/264 (69.7%)
# Similarity:   184/264 (69.7%)
# Gaps:          36/264 (13.6%)
# Score: 621.5
# 
#
#=======================================

BSNT_02616___      1 ATGACTGA----TCAACACTTGGAAGATTTGATTGTCCACATTGT-GACG     45
                     ||||.|||    ||    |||||||||.||||||||...|||.|| || |
BPUM_1498          1 ATGAATGAGCTGTC----CTTGGAAGAATTGATTGTGTCCATCGTCGA-G     45

BSNT_02616___     46 CCGCTTGTTGATCATCCAGATGACATTCGCG-----TCATAAG-AGAAGA     89
                     ||.|||||||||...||.||.||.||||.||     ||||.|| |.||||
BPUM_1498         46 CCACTTGTTGATTTCCCTGAAGATATTCACGTATCTTCATTAGAAAAAGA     95

BSNT_02616___     90 AACCGATCAAAAGATT---GCGCTGCGCTTATCTGTCCAT----AAGTCA    132
                        .||.|||..||||   .|.|||      ||||||.||    |    |
BPUM_1498         96 ---TGAGCAAGTGATTTACACACTG------TCTGTCAATGCTGA----A    132

BSNT_02616___    133 GATACCGGTAAAGTTATCGGAAAGCAAGGCCGGACTGCAAAAGCGATTCG    182
                     ||||||||.||.||.|||||||||||.||.||.||.|||||||||||.||
BPUM_1498        133 GATACCGGAAAGGTGATCGGAAAGCAGGGACGTACAGCAAAAGCGATACG    182

BSNT_02616___    183 AACAGCTGTATTTGCAGCTGGCGCACAGTCTTCTAAGAAAGTTCAATTTG    232
                     |||||...|.||||||||..|.|||.||||||||||||||||||||.|||
BPUM_1498        183 AACAGTCATGTTTGCAGCAAGTGCAGAGTCTTCTAAGAAAGTTCAACTTG    232

BSNT_02616___    233 AAATATTTGACTAA    246
                     |.||...|||||||
BPUM_1498        233 AGATTGCTGACTAA    246


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