Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02626 and BPUM_1505

See Amino acid alignment / Visit BSNT_02626 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:13
# Commandline: needle
#    -asequence dna-align/BSNT_02626___ylqG.1.24716.seq
#    -bsequence dna-align/BPUM_1505.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02626___ylqG-BPUM_1505.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02626___ylqG-BPUM_1505.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02626___ylqG
# 2: BPUM_1505
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2061
# Identity:    1068/2061 (51.8%)
# Similarity:  1068/2061 (51.8%)
# Gaps:         654/2061 (31.7%)
# Score: 2222.5
# 
#
#=======================================

BSNT_02626___      1 ATGAACATACGAAATGATGTGCAAAAGGCGCTGCAGCACCTTTTCGGGCG     50
                     ||||..|.|....|.|||.|.||        |.||||||         .|
BPUM_1505          1 ATGACAAGAGTTGAGGATATACA--------TACAGCAC---------TG     33

BSNT_02626___     51 TACAGCCGTCCCGCAGGAAACATCAAAAG---------TAAA---CGAAG     88
                     .|.|||||    ||.|.|.||..||.|||         ||||   |||||
BPUM_1505         34 AATAGCCG----GCTGAATACGGCAGAAGCTGTGCCATTAAACACCGAAG     79

BSNT_02626___     89 CGCTAAACGGGGAGAA---GCGTC------TCCTCTTAGGAAAAGTGCTT    129
                        .|||   |||.||   ||.||      |.|||   ||.|||||.||.
BPUM_1505         80 ---GAAA---GGAAAATGTGCATCGGTTGATTCTC---GGTAAAGTACTG    120

BSNT_02626___    130 CGTTTACTAGGAGATCAGCATGCCCTGATCCAAGTCGGCAATCAAACTGT    179
                     ....|.||.||||||.|....|||||..|.|||.|.|||  ||||     
BPUM_1505        121 AAAATGCTCGGAGATGATACGGCCCTTGTTCAAATAGGC--TCAA-----    163

BSNT_02626___    180 TCAGGGAAAACTTGAAA-CCCAGCT-TCGTCCTCAG------------GC    215
                      ||   ||||  |.||| |.||||| .|| .|||||            ||
BPUM_1505        164 -CA---AAAA--TAAAAGCGCAGCTAGCG-GCTCAGCTCAAAGCAGACGC    206

BSNT_02626___    216 ATACTATTGGTTTTCC--TACGAAAAAAA------AACGGCAG----AGC    253
                     ||..||||||  ||||  |..|||.||.|      |  |||||    |..
BPUM_1505        207 ATTTTATTGG--TTCCAATTTGAACAAGAGGGTGGA--GGCAGCCTCAAT    252

BSNT_02626___    254 AAAC--AGGCC-GTCTTCAGGTCGTTCAAAGCTTTGATCAAAATCCTAAA    300
                     ||||  ||||| |||  |||      |||   |||||.|||.|||||||.
BPUM_1505        253 AAACTAAGGCCAGTC--CAG------CAA---TTTGACCAAGATCCTAAG    291

BSNT_02626___    301 ACCATT-CAGGATGCAGCTGGCAAGCTTTTA-AATGCCATGTCAGTGAAG    348
                     | |||| .||||||||||||.|||..|.||| ||.|.| |.||..|||| 
BPUM_1505        292 A-CATTAAAGGATGCAGCTGCCAAATTATTAGAAGGTC-TCTCTCTGAA-    338

BSNT_02626___    349 ACGTCAAACGCAGCTCTCATGATGACAGGAGCGATGCTGAAGAGCAAAAC    398
                          |||||.|     |.|||..|||        .||.||.|||  .||
BPUM_1505        339 -----AAACGGA-----CTTGAAAACA--------TCTTAACAGC--TAC    368

BSNT_02626___    399 ACC---CGTAACAGAA------------AATGA--------TATCAAAAC    425
                     |.|   ..|||.||||            |||||        ||  |||||
BPUM_1505        369 AGCTTTTTTAAAAGAAAAGTCCGTCATCAATGAGGCAGAATTA--AAAAC    416

BSNT_02626___    426 AGCTGTCCGCTGGATGGACAC-GCTGCCTTCGCAAGACAC-------AAA    467
                     .||.||....|||||.|| || |||      .||||..||       |||
BPUM_1505        417 GGCAGTGAAATGGATCGA-ACAGCT------TCAAGGAACTGATGTGAAA    459

BSNT_02626___    468 AAAAG----CAGTTGAAACGGTTCTCTTCGCTTTAAAGCGTGATCTT-CC    512
                     |||.|    ||||     |..|.||.||.||||||||....|| ||| ||
BPUM_1505        460 AAAGGTCTCCAGT-----CACTCCTATTTGCTTTAAAAAAAGA-CTTGCC    503

BSNT_02626___    513 CATTCACTCCGA--GATT--TTGAATGGTGTTCACGCTGTGAA---ATCG    555
                     .|||||   .||  ||.|  ||.|||....||.| ||.|||||   |||.
BPUM_1505        504 GATTCA---GGAAGGAGTACTTCAATCCATTTTA-GCCGTGAAATCATCC    549

BSNT_02626___    556 CCTGTTCCGTTGCATCAGCACGTATCCCA--GCTGCT------------A    591
                     .|||.||   |.||||||.|  |||..||  ||||||            |
BPUM_1505        550 TCTGCTC---TCCATCAGGA--TATGACAGCGCTGCTAGAACGCTTAACA    594

BSNT_02626___    592 CAGGCAATCGACCAAAACCCTCAGCAGA-GCCAAATGATGTCAAAG---C    637
                     |||     |..||.||.|.||   |||| ||||        ||.||   |
BPUM_1505        595 CAG-----CTCCCGAAGCACT---CAGACGCCA--------CACAGGCCC    628

BSNT_02626___    638 TAAAGGAAG---------CAGTTA-CGGTGCTTTTAAATAGTGAAATCGA    677
                     |.|...|||         |||||| .||||||        |.||.|.|  
BPUM_1505        629 TTACACAAGCCGTTCGATCAGTTATAGGTGCT--------GAGACAAC--    668

BSNT_02626___    678 TGTCCATGCAGAACGGCTAATTGATAAGCTTAT------TTCTTTAACCG    721
                     |||||||||||||..|||          |||||      ||||...|.||
BPUM_1505        669 TGTCCATGCAGAAAAGCT----------CTTATCGCTCCTTCTAGCAGCG    708

BSNT_02626___    722 ACAATACGAAAGCACCTTCTCCGGCGAATACAGCTGGAAGCAGGGAG---    768
                     |.|    |||.|          ||||      ||  ||||||.||||   
BPUM_1505        709 AGA----GAAGG----------GGCG------GC--GAAGCAAGGAGGAA    736

BSNT_02626___    769 ------CT-TAG-----CACACC--AGCTGGCTCCCCCGGAAAAGCCAGC    804
                           || |||     || |.|  |.|||.|||..||  |||||     
BPUM_1505        737 ATCTACCTGTAGTGCCTCA-ATCTAATCTGTCTCAACC--AAAAG-----    778

BSNT_02626___    805 CTGCCGATTGCAAA----TC---ACACAGCAGAACAGGGAAGCATACAAG    847
                                |||    ||   ||.|||.||.|||.|  |||.|  .||
BPUM_1505        779 -----------AAACTAGTCAGAACCCAGTAGCACAAG--AGCGT--CAG    813

BSNT_02626___    848 AAGAGC----TTGTTAAAAC-----AGCAGCAGAC----ATTCCAATTAA    884
                     |.||.|    ||.||.||.|     .||||||..|    |.||||   ||
BPUM_1505        814 ACGACCCAAGTTATTCAATCTAACGTGCAGCAATCAACAAGTCCA---AA    860

BSNT_02626___    885 AG-------AAGCCCGC--CAGCTGCTGGTGAAGCTGA-CGGAATCTGCT    924
                     ||       ||.|||||  ||||        ||..||| ||||   |.||
BPUM_1505        861 AGAGCTGCAAATCCCGCCTCAGC--------AAATTGAGCGGA---TACT    899

BSNT_02626___    925 GAAAAAAACAGTCTCCAAATTG-TGAAAGAA-----------GCAGCAAA    962
                     .|.|     |||       ||| |||||.||           ||||||| 
BPUM_1505        900 TACA-----AGT-------TTGATGAAACAAGGTGCAGATGGGCAGCAA-    936

BSNT_02626___    963 TTGGA-------TTAAAGCGGCT------------------GCTTCATCG    987
                        ||       |||||.|.|||                  ||||||.|.
BPUM_1505        937 ---GAGCCTAACTTAAAACAGCTCACGTCATTGCTGCAAGGGCTTCAGCA    983

BSNT_02626___    988 GG--TGATAGTAAGTCACTTGCAGCTTCAGCTGTTTTACAAGCGGCACAA   1035
                     ||  .||| .|.||.|...||||....||.||||       ||..||.||
BPUM_1505        984 GGCAGGAT-CTCAGCCGGATGCAAAAGCAACTGT-------GCTCCAAAA   1025

BSNT_02626___   1036 ---------------GTCACAGACCAGGAAGCCGAAGTCTTTTTAAAGGC   1070
                                    |||| |.|.|||  ||.||||..|.||     |||
BPUM_1505       1026 AGAATTTCCGTTCCTGTCA-AAAACAG--AGGCGAAAGCATT-----GGC   1067

BSNT_02626___   1071 T------GTTCAGCAGACAGCACCC-CATTTGGCGGATAAGGCAGATGTT   1113
                     |      ||.||||||||.|.|||| .|||..|| .||||..|.|||||.
BPUM_1505       1068 TCAGGTGGTACAGCAGACGGAACCCGTATTAAGC-AATAAAACCGATGTG   1116

BSNT_02626___   1114 CTTTCTTT-CTTAT--CCAAAGTGAAAACGGCAATCGGCGCAAGGGACGA   1160
                     ||...||| ||.||  |.|   ||||||.||||||.||.|.|.|.||.||
BPUM_1505       1117 CTCGATTTACTCATGACGA---TGAAAAAGGCAATAGGTGTACGTGATGA   1163

BSNT_02626___   1161 ----GGT-TGCGTTCATTAAAGCGTTTGAACAAGGAAGCGCAGTCACATC   1205
                         ||| |||     |.|||....|.|||.|||     |||||||    
BPUM_1505       1164 AATCGGTATGC-----TGAAACTACTCGAAAAAG-----GCAGTCA----   1199

BSNT_02626___   1206 TGGCGAAATGCAATCCATCA--AGCT-----------GGCTCTTTCTGCC   1242
                      ||    |||.||...||||  ||||           .||||.||     
BPUM_1505       1200 -GG----ATGTAAAAAATCAGGAGCTTCACCAATTAAAGCTCGTT-----   1239

BSNT_02626___   1243 TTAA-------GAGCATCGCA---TGAGGTAGCCGAACCAGTCAAACAAG   1282
                     ||||       |||    |||   |||..||.|.||.||.||.|||.|||
BPUM_1505       1240 TTAAATGATGTGAG----GCAGTCTGATTTACCAGAGCCCGTAAAAAAAG   1285

BSNT_02626___   1283 AAGCCGATCAGCTTTTTCATAAATTAAATGGCCAGCTTTTCATGCAGCAG   1332
                     |||.||||||..|.|||||||.|||.||.||.|||.|.||..||||.|||
BPUM_1505       1286 AAGTCGATCAATTGTTTCATAGATTGAACGGGCAGTTATTTGTGCATCAG   1335

BSNT_02626___   1333 GACCATC-CATCATACAGCCAAATTGTAATGTCATTTCCGATGTTTTCGA   1381
                     ||..||| .|.||| |||||||||..||.|.||.|.||||.|.|||||.|
BPUM_1505       1336 GAAAATCAAACCAT-CAGCCAAATGATAGTCTCTTATCCGCTCTTTTCAA   1384

BSNT_02626___   1382 -----AGTCAGGGGTTCAGGACATGACTGTTCTGTTTAAAGGA---AAGA   1423
                          |||     |||||.||..|.||..||.|..|.||||||   ||||
BPUM_1505       1385 AACATAGT-----GTTCAAGATTTAACCTTTATTCTAAAAGGACATAAGA   1429

BSNT_02626___   1424 AAGAAGCGGATGG----AAAGCTTGATCCTTCCCATTGCCGCCTTTTGTT   1469
                     ||.||   |||||    |    |.|||..|||.||.||.||.||..||||
BPUM_1505       1430 AAAAA---GATGGGTCTA----TAGATATTTCTCAGTGTCGGCTCATGTT   1472

BSNT_02626___   1470 TTTGCTGCAGCTTGATACACTAAAA----GAAACCGTCG--------TTG   1507
                     ||                |||.|||    ||||.|.|||        ||.
BPUM_1505       1473 TT----------------ACTTAAACATGGAAAACCTCGAGGAAACATTA   1506

BSNT_02626___   1508 ATTG-CTTGGTA-----CAACAAAAAGTCATGACCATTACAATAGAGACT   1551
                     ||.| ||  |||     ||.|||||.||.|||.|.||||||.|.||.|||
BPUM_1505       1507 ATCGACT--GTACGATTCAGCAAAAGGTTATGTCAATTACAGTTGAAACT   1554

BSNT_02626___   1552 GATTTCGAGCTGCAGGCTGCG----ATCGATCCGATGGTGCCCGCGCTTA   1597
                     |.|...||.||.||.|    |    ||..||||||||.|.||.||..|| 
BPUM_1505       1555 GGTCATGAACTTCAAG----GAATCATTAATCCGATGATTCCAGCTGTT-   1599

BSNT_02626___   1598 AACAGGGGCTAAAGGAAATG-----GGGTACAGCCTTTCAGGGGTAAACG   1642
                         .|||..||...|||||     ||.||.||||||.|||||.|.|..|
BPUM_1505       1600 ----CGGGAGAATTTAAATGCCTTAGGATATAGCCTTACAGGGATTACAG   1645

BSNT_02626___   1643 CTAAAAAAAGGGTTCACACCGAAGAAAAG-GCTTCAATCGATC-------   1684
                     |  |||.|||            |||.||| ||  ||.|.||||       
BPUM_1505       1646 C--AAAGAAG------------AGACAAGAGC--CAGTAGATCCGTCTCA   1679

BSNT_02626___   1685 ---AATATAT-AACA-------AGTATCAGTGATCAGGAAG---TGGATG   1720
                        ..||.|| ||||       |..|||||.|   ||.|||   ||||..
BPUM_1505       1680 CTTTCTAGATGAACACTTTCATAAAATCAGCG---AGAAAGGGCTGGACT   1726

BSNT_02626___   1721 TGAAAATATGA   1731
                     |...|.|||||
BPUM_1505       1727 TACGAGTATGA   1737


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