Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02631 and BPUM_1510
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:13
# Commandline: needle
# -asequence dna-align/BSNT_02631___topA.1.24716.seq
# -bsequence dna-align/BPUM_1510___topA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02631___topA-BPUM_1510___topA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02631___topA-BPUM_1510___topA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02631___topA
# 2: BPUM_1510___topA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2096
# Identity: 1604/2096 (76.5%)
# Similarity: 1604/2096 (76.5%)
# Gaps: 40/2096 ( 1.9%)
# Score: 6040.0
#
#
#=======================================
BSNT_02631___ 1 ATGTCTGATTATCTAGTCATCGTGGAATCGCCCGCTAAGGCGAAAACGAT 50
|||.||||||||.||||||||||.||.|||||.||.||||||||||||||
BPUM_1510___t 1 ATGGCTGATTATTTAGTCATCGTTGAGTCGCCAGCCAAGGCGAAAACGAT 50
BSNT_02631___ 51 TGAACGTTACTTAGGTAAAAAATATAAAGTAAAAGCATCAATGGGACATG 100
|||.|||||.|||||||||||.|||||||||||.||.|||||||||||..
BPUM_1510___t 51 TGAGCGTTATTTAGGTAAAAAGTATAAAGTAAAGGCTTCAATGGGACACA 100
BSNT_02631___ 101 TCCGGGATCTTCCAAAAAGTCAAATGGGAGTTGACATAGAACAGAATTTT 150
|..|.|||.|.||.||||||||..|.||.|||||||..||.||..|.||.
BPUM_1510___t 101 TAAGAGATTTACCGAAAAGTCAGCTTGGTGTTGACACTGAGCATGACTTC 150
BSNT_02631___ 151 GAACCGAAATATATTACCATTCGAGGTAAAGGTCCGGTATTAAAAGAGCT 200
|||||||..||||||||.|||||.||.|||||.||.||.||||||||..|
BPUM_1510___t 151 GAACCGAGGTATATTACGATTCGCGGGAAAGGCCCCGTGTTAAAAGAATT 200
BSNT_02631___ 201 GAAAACGGCAGCGAAAAAAGCCAAAAAAGTGTATCTCGCAGCCGACCCCG 250
.|||||.||.|||||||||||.||.|||||.|||||||||||.|||||||
BPUM_1510___t 201 AAAAACAGCTGCGAAAAAAGCAAAGAAAGTCTATCTCGCAGCTGACCCCG 250
BSNT_02631___ 251 ACAGAGAAGGGGAAGCGATTGCATGGCATTTGGCACACAGTCTTGATTTA 300
|.|||||.||.|||||||||||.||||||||.||.||.||.|||||..|.
BPUM_1510___t 251 ATAGAGAGGGAGAAGCGATTGCTTGGCATTTAGCGCATAGCCTTGACCTT 300
BSNT_02631___ 301 GATCTCAACTCAGACTGCCGTGTGGTGTTTAACGAAATTACAAAAGACGC 350
||.|||...||.||||||||.||.||.|||||.||.|||||||||||.||
BPUM_1510___t 301 GACCTCTCTTCTGACTGCCGCGTTGTCTTTAATGAGATTACAAAAGATGC 350
BSNT_02631___ 351 TATTAAGGAATCGTTTAAGCATCCCCGCATGATCAATATGGATTTAGTGG 400
||||||.||.||.|||||||||||.||.||||||||||||||||||||.|
BPUM_1510___t 351 TATTAAAGATTCCTTTAAGCATCCACGTATGATCAATATGGATTTAGTTG 400
BSNT_02631___ 401 ATGCACAGCAAGCGAGACGTATTTTAGACAGGCTTGTCGGATATAAAATC 450
||||||||||.||.|||||.||.|||||..|.||.||.||.||||||||.
BPUM_1510___t 401 ATGCACAGCAGGCAAGACGGATCTTAGATCGTCTCGTTGGGTATAAAATT 450
BSNT_02631___ 451 AGTCCAATCTTATGGAAAAAAGTCAAAAAAGGGCTT-AGCGCAGGACGCG 499
|||||.||.||||||||.||||| .||||||||||| ||.||.||.||.|
BPUM_1510___t 451 AGTCCGATTTTATGGAAGAAAGT-GAAAAAGGGCTTAAGTGCCGGTCGTG 499
BSNT_02631___ 500 TGCAATCCGTTGCCCTCCGTTTGATTATTGACCGTGAAAAAGAGATTAAC 549
|.|||||.|||||.|||||..||||.|||||.||.||.||.||.||.||.
BPUM_1510___t 500 TTCAATCAGTTGCACTCCGCCTGATCATTGATCGCGAGAATGAAATCAAT 549
BSNT_02631___ 550 GACTTTAAGCCCGAGGAATATTGGACAATTGACGGTACGTTCTTAAAAGG 599
||.|||||.||.||.|||||.|||||||||||||||||.|||.|||||||
BPUM_1510___t 550 GAATTTAAACCAGAAGAATACTGGACAATTGACGGTACATTCCTAAAAGG 599
BSNT_02631___ 600 TCAAGAAACCTTTGAAGCGAGCTTTTTCGGGAAAAACGGCAAAAAACTTC 649
..||||||.|||.|||||||||||.||.||....||.||||||||.|.||
BPUM_1510___t 600 AAAAGAAAGCTTCGAAGCGAGCTTCTTTGGCGTCAATGGCAAAAAGCATC 649
BSNT_02631___ 650 CTTTAAATAGTGAAGCTGATGTAAAAGAGATTCTTTCTCAGCTCAAAGGG 699
|..|.||.|...|||..|||||||||||.||.|||||..|.||.||||||
BPUM_1510___t 650 CACTGAAAACAAAAGAAGATGTAAAAGAAATCCTTTCGAAACTAAAAGGG 699
BSNT_02631___ 700 AATCAATATACAGTTGAAAAAGTAACCAAAAAGGAACGCAAACGTAATCC 749
|...|||...|.||.||.|||||.||.|||||.||.||.|||||.||.||
BPUM_1510___t 700 AGCAAATTCTCCGTAGAGAAAGTGACGAAAAAAGAGCGTAAACGCAACCC 749
BSNT_02631___ 750 CGCTTTGCCTTTTACCACTTCTACCCTGCAGCAGGAAGCGGCTCGCAAG- 798
.|||.|.||.|||||.||.|||||..|.|||||||| |||| |||||
BPUM_1510___t 750 AGCTGTTCCGTTTACAACATCTACTTTACAGCAGGA---GGCT-GCAAGA 795
BSNT_02631___ 799 ---CTCAATTTCAGAGCGAAGAAAACGATGATGATTGCACAGCAATTATA 845
.|.||.|||.|.|||||.||.||.|||||||||||||||||||||||
BPUM_1510___t 796 AAATTAAACTTCCGTGCGAAAAAGACAATGATGATTGCACAGCAATTATA 845
BSNT_02631___ 846 TGAAGGAATTGATTTAGGAAGAGAAGGAACGGTTGGTCTGATCACGTATA 895
|||||||||||||.|.||.|.||||||.||.||.||.||.||.||.||.|
BPUM_1510___t 846 TGAAGGAATTGATCTTGGTAAAGAAGGTACAGTCGGACTCATTACATACA 895
BSNT_02631___ 896 TGAGAACGGATTCAACCCGTATTTCAAATACGGCTGTTGATGAAGCAGCT 945
|||||||.||.|||||.||||||||.||||||||..||||.||||.|.||
BPUM_1510___t 896 TGAGAACAGACTCAACTCGTATTTCGAATACGGCGATTGAAGAAGTATCT 945
BSNT_02631___ 946 GCATTTATTGATCAGACATATGGAAAAGAGTTCCTAGGCGG--------A 987
||.||.|||||||||||.||.||.||..|.|||.|| |
BPUM_1510___t 946 GCTTTCATTGATCAGACGTACGGTAAGAATTTCTTA-----AATACAACA 990
BSNT_02631___ 988 AAACGGAAGCCTGCGAAAAAGAATGAAAATGCCCAGGATGCCCACGAAGC 1037
|||||.| |.|..|||||||||||||||||.||.|||||.||||||||
BPUM_1510___t 991 AAACGAA---CCGTTAAAAAGAATGAAAATGCACAAGATGCTCACGAAGC 1037
BSNT_02631___ 1038 AATTCGGCCGACATCAGTTCTTAGAAAACCAAGTGAATTAAAAGCA-GTC 1086
.||..|.|||||.||....||.|||||||||...||..|.||| || ||.
BPUM_1510___t 1038 CATCAGACCGACCTCTACGCTAAGAAAACCAGCAGATGTCAAA-CATGTT 1086
BSNT_02631___ 1087 CTCGGCAGAGACCAAATGAGACTGTATAAATTAATTTGGGAGCGTTTTGT 1136
.|..||.||||.||..|..|..||||||||||.||||||||.||.||.||
BPUM_1510___t 1087 TTAAGCCGAGATCAGCTTCGTTTGTATAAATTGATTTGGGAACGATTCGT 1136
BSNT_02631___ 1137 TGCCAGCCAAATGGCATCGGCTGTTCTCGATACAATGAGTGTCGA-CCTG 1185
.||.|||||||||||..||||||||||.||||||||||||||.|| |.||
BPUM_1510___t 1137 CGCAAGCCAAATGGCGCCGGCTGTTCTTGATACAATGAGTGTGGATCTTG 1186
BSNT_02631___ 1186 ACAAACAACGGTTTGACATTTCGTGCAAATGGAAGTAAAGTCAAGTTTTC 1235
| .||.|||||..|.|||||.|||||.||.||.||.|||||.||.||..|
BPUM_1510___t 1187 A-TAATAACGGACTTACATTCCGTGCTAACGGGAGCAAAGTGAAATTCCC 1235
BSNT_02631___ 1236 CGGGTTTATGAAGGTGTATGTTGAAGGAAAAGACGATCAAATGGAAGAAA 1285
.||.||.||||||||.|||||.|||||.||||||||.||..|.|||||||
BPUM_1510___t 1236 TGGATTCATGAAGGTATATGTAGAAGGGAAAGACGACCAGCTAGAAGAAA 1285
BSNT_02631___ 1286 AAGACCGGATGCTGCCTGACTTACAAGAAGGCGACACGGTATTATCAAAA 1335
|.|||...|||.|||||||..||.|||||||.||.|||||..|.||.|||
BPUM_1510___t 1286 AGGACAAAATGTTGCCTGATCTAAAAGAAGGTGATACGGTTCTTTCTAAA 1335
BSNT_02631___ 1336 GATATAGAACCTGAGCAGCATTTTACCCAGCCGCCTCCGCGATATACTGA 1385
|||||.||||||||.|||||.||.||.||||||||||||||.||.|||||
BPUM_1510___t 1336 GATATCGAACCTGAACAGCACTTCACGCAGCCGCCTCCGCGCTACACTGA 1385
BSNT_02631___ 1386 GGCCCGGCTCGTTAAAACCCTTGAAGAACGCGGTATCGGCCGTCCATCCA 1435
|||..|.||.||.|||||.||||||||.|..|||||.||||||||.||.|
BPUM_1510___t 1386 GGCAAGACTTGTCAAAACTCTTGAAGAGCTAGGTATAGGCCGTCCGTCTA 1435
BSNT_02631___ 1436 CATATGCTCCGACACTTGATACTATTCAGCGTCGCGGCTACGTGGCATTG 1485
|.|||||.|||||..|.|||||.|||||....||||||||.||.|||.|.
BPUM_1510___t 1436 CGTATGCACCGACGTTAGATACGATTCAAAAGCGCGGCTATGTTGCACTT 1485
BSNT_02631___ 1486 GATAATAAACGTTTCGTTCCGACTGAATTAGGTCAGATCGTTCTTGACTT 1535
|||||||||||.||..|.||.||.||..|.||..|.||.|||||..||||
BPUM_1510___t 1486 GATAATAAACGGTTTATCCCAACAGAGCTTGGGGAAATTGTTCTCAACTT 1535
BSNT_02631___ 1536 GATCATGGAGTTTTTCCCTGAGATCATTAACGTTGAGTTTACAGCTAAAA 1585
.|||||.||.||.||||||||.||||||||.||.||.||.||.||.||||
BPUM_1510___t 1536 AATCATTGAATTCTTCCCTGAAATCATTAATGTGGAATTCACGGCGAAAA 1585
BSNT_02631___ 1586 TGGAGAGAGATCTTGATCATGTTGAAGAAGGCAATACTGAATGGGTCAAA 1635
||||.|.|||.||||||...|||||||||||.|..|.|||||||||....
BPUM_1510___t 1586 TGGAAAAAGAACTTGATAGCGTTGAAGAAGGTACGATTGAATGGGTTCGC 1635
BSNT_02631___ 1636 ATTATTGATAATTTCTA-CACCGATTTTGAAAAACGCGTCAAAAAAGCCG 1684
|||||.||.|..||||| || .||.||||.||||||.|||.|||||||.|
BPUM_1510___t 1636 ATTATCGACAGCTTCTATCA-AGACTTTGCAAAACGGGTCGAAAAAGCAG 1684
BSNT_02631___ 1685 AATCGGAAATGAAGGAAGTTGAGATTGAACCAGAGTATGCTGGAGAGGAT 1734
||.|.||||||.|.||||||||.|||||.||.||.||.||.||||..||.
BPUM_1510___t 1685 AAGCAGAAATGCAAGAAGTTGAAATTGAGCCTGAATACGCCGGAGTTGAC 1734
BSNT_02631___ 1735 TGTGAATTGTG----CAGTTCTCCAATGGTATATAAAATGGGACGGTACG 1780
||||||..||| || |||.|||||.||.||||||||.||.||||
BPUM_1510___t 1735 TGTGAAGAGTGTGGACA----TCCGATGGTGTACAAAATGGGTCGATACG 1780
BSNT_02631___ 1781 GTAAATTCTTAGCTTGCTCCAACTTCCCTGACTGCCGGAACACGAAACCG 1830
||||.||..|.||||||||.|||||.|||||.|||||.|||||.|||||.
BPUM_1510___t 1781 GTAAGTTTATGGCTTGCTCTAACTTTCCTGATTGCCGCAACACAAAACCA 1830
BSNT_02631___ 1831 ATTGTGAAACAAATCGGTGTGAAGTGCCCGAGCTGCGGAGAAGGAAACAT 1880
|||||||||.|.|||||||||||.|||||.|..||....|||||||||||
BPUM_1510___t 1831 ATTGTGAAAGACATCGGTGTGAAATGCCCAACATGTCATGAAGGAAACAT 1880
BSNT_02631___ 1881 TGTTGAGCGAAAATCGAAAAAGAAACGGGTGTTTTACGGCTGTGACCGTT 1930
||||||.||.|||||.||.|||...||..|.|||||.||||||||.||||
BPUM_1510___t 1881 TGTTGAACGTAAATCTAAGAAGCGCCGCATTTTTTATGGCTGTGATCGTT 1930
BSNT_02631___ 1931 ATCCGGACTGTGAATTCGTATCATGGGACAAACCAATTGAACGAAAATGC 1980
.|||.||.||.||||||||.||.|||||||||||.||||||.||||.||.
BPUM_1510___t 1931 TTCCAGAGTGCGAATTCGTCTCTTGGGACAAACCGATTGAAAGAAAGTGT 1980
BSNT_02631___ 1981 CCGAAATGCGGAAAAATGCTCGTCGAGAAAAAACTCAAAAAAGGCATACA 2030
||.|||||||.|||.|||||.||.||||||||.||.|||||||||||.||
BPUM_1510___t 1981 CCAAAATGCGAAAATATGCTTGTAGAGAAAAAGCTGAAAAAAGGCATGCA 2030
BSNT_02631___ 2031 AGTCCAATGCGTGGAATGCGATTATAAGGAAGAACCACAGAAGTAG 2076
|||.|||||.|||.|.||.||||||||.||.||||.|||.||.|||
BPUM_1510___t 2031 AGTTCAATGTGTGAACTGTGATTATAAAGAGGAACAACAAAAATAG 2076
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