Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02646 and BPUM_1521
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:14
# Commandline: needle
# -asequence dna-align/BSNT_02646.1.24716.seq
# -bsequence dna-align/BPUM_1521___fliH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02646-BPUM_1521___fliH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02646-BPUM_1521___fliH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02646
# 2: BPUM_1521___fliH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 890
# Identity: 480/890 (53.9%)
# Similarity: 480/890 (53.9%)
# Gaps: 262/890 (29.4%)
# Score: 1183.0
#
#
#=======================================
BSNT_02646 1 TTGTCTAATATCATTAAACAAGAATCATCTATTTCTCC--ACAAAAG--G 46
|||||||..||.||.|||||.|||.|||||.||..||| |..||.| |
BPUM_1521___f 1 TTGTCTAGGATTATCAAACATGAAACATCTGTTATTCCTGAGCAACGCCG 50
BSNT_02646 47 AAAAAAGAAAACTTTCTATACAAGAGGTGCGTATT-------GATCATTC 89
..|||.|| ||.||.|.||..|.||| |..|| ||.|||
BPUM_1521___f 51 GCAAACGA----TTCCTTTGCAGCAAGTG-GAGTTCAAAAAAGAACAT-- 93
BSNT_02646 90 TCACCTTTTGCAGGCTGAAG-AGAACTCGGAGGCGCTTATGGCCCGAGTG 138
|| ||||| ||| ||||.| .|.||
BPUM_1521___f 94 ----------CA---TGAAGAAGA----------GCTTGT-----CAATG 115
BSNT_02646 139 AAAGAGGAAGC------------------TGACCGGATTTCT---GAGCA 167
|||.| ||||| ||| |.|| ||.||
BPUM_1521___f 116 AAACA-GAAGCATCGCAGCTTGTACTAAGTGA------TGCTGAAGATCA 158
BSNT_02646 168 GGCAAACAGTCATAT---------AGAAAATATTCGCCGTCAAATCGAGC 208
.||| ||||.||| ||.|||||.| ||||
BPUM_1521___f 159 AGCA---AGTCGTATAGTAGAACAAGCAAATAAT------------GAGC 193
BSNT_02646 209 AGGAGAAAAACGATTGG-------------GCG----GCTGA-------- 233
..|| |||||| |.||| ||| |||||
BPUM_1521___f 194 TTGA-AAAAAC-AATGGCTGAAATCAATCAGCGCCGCGCTGATTTTGAAG 241
BSNT_02646 234 AAAACAGA----AGCTTATTGAAGAAGCAAAA----------ACC--GAG 267
||.|.||| ||||.|||||||||||.||| ||| ||.
BPUM_1521___f 242 AAGAAAGAATGCAGCTCATTGAAGAAGCGAAACAAGCTGGGTACCAAGAT 291
BSNT_02646 268 GGCTTTGAACAAGGAGTAGCGTTGGGCAAAGCTGAGGCATTGCAACAGTA 317
|||||..||.| |||..||||.||.||..||...|||||
BPUM_1521___f 292 GGCTTCCAAAA------------GGGTGAAGCAGATGCGATGAGTCAGTA 329
BSNT_02646 318 TGCCGAAC------TGATCGGCCAAGCGAA-------------------- 341
| |.|.| |||| |||||.||
BPUM_1521___f 330 T--CAATCAATTCTTGAT----CAAGCAAATGACATTGTCAGTCTTGCCA 373
BSNT_02646 342 --CAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGA 389
|||.||.|| ||| .|||||| |||| ||||| .
BPUM_1521___f 374 AGCAGGATTAC-GAA-----GAGAAAA----TTGA----AAGCT-----C 404
BSNT_02646 390 CGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTT 439
||| .|||.||||.||.||.||.||..|||..||.||.|||...||||
BPUM_1521___f 405 CGC---AGAAAAAATTGTGGAACTGGCTTTTGAACTCGCCAAACGCGTTT 451
BSNT_02646 440 GGCA-GCAAAAGTCTGATGA---TAAAGA---------GGCTTTCCTCCT 476
||.| .| |.||||||| .||||| |||| |||.|
BPUM_1521___f 452 GGTACTC----GGCTGATGACACGAAAGATCAATTTTTGGCT---CTCGT 494
BSNT_02646 477 GCTTGTACAA-CAGGTTATAAACGAAGTGAAGGAATATGACGATATATCA 525
| || |||||.||....||||||||.||||||||||||||.||.
BPUM_1521___f 495 G-------AAGCAGGTCATTTCTGAAGTGAAAGAATATGACGATATTTCC 537
BSNT_02646 526 ATTTATGTTGATCC---ATATTAC---TATGAGACAATCTTTCAGCAAAA 569
||.|||||.||.|| |.||||| .|||.|| |..||.|.||
BPUM_1521___f 538 ATCTATGTGGACCCTGAACATTACGATCATGTGA------TGGAGTATAA 581
BSNT_02646 570 AGATGAAATCCAGCAGCTTCTTTATAAAGAATGC-CGGCTTGGCATATAT 618
|||.| |||..|.|||..||.||..||||.||.| |..||||.|||.||.
BPUM_1521___f 582 AGACG-AATTAATCAGAATCCTTCAAAAGGATACACACCTTGCCATTTAC 630
BSNT_02646 619 GCTGATGAAAAAGCTCAAAAAGGAACCTGTTATATTGAAACTCCTTTTGG 668
.|.|||||||||||.|.||||||.||.|||||..|.|||||....|||||
BPUM_1521___f 631 TCAGATGAAAAAGCGCCAAAAGGGACTTGTTACGTAGAAACAAGCTTTGG 680
BSNT_02646 669 CAGGGTAGATGCGAGTGTTGACACACAATTGATGCAATTGAAAGATAAAC 718
.|..||.||.|||||||||||.||.|||.|||..||.||||||||.||.|
BPUM_1521___f 681 AAAAGTGGAAGCGAGTGTTGATACCCAAATGAATCAGTTGAAAGAAAAGC 730
BSNT_02646 719 TTCT-GACAGCGCTGGAAGCAGGTG----CAGCTGAATGA 753
|.|| || ||...|.||..|||||| || |||||
BPUM_1521___f 731 TACTAGA-AGTCATTGATTCAGGTGATCACA----AATGA 765
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