Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02650 and BPUM_1524
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:15
# Commandline: needle
# -asequence dna-align/BSNT_02650___ylxF.1.24716.seq
# -bsequence dna-align/BPUM_1524___ylxF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02650___ylxF-BPUM_1524___ylxF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02650___ylxF-BPUM_1524___ylxF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02650___ylxF
# 2: BPUM_1524___ylxF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 768
# Identity: 414/768 (53.9%)
# Similarity: 414/768 (53.9%)
# Gaps: 222/768 (28.9%)
# Score: 1043.0
#
#
#=======================================
BSNT_02650___ 1 ATGTCC------GGCAAAAA-GAAAGAATCA------GGTAAGTTCCGTT 37
||| || ||.||||| |||||||||| ||.||.||.|..|
BPUM_1524___y 1 ATG-CCTAAGAAGGAAAAAACGAAAGAATCAAGCGGCGGAAAATTTCAAT 49
BSNT_02650___ 38 CGGTTTTGCTTATCATTATCCTCCCGCTGA---TGTTTCTATTAATCGCA 84
.|.|.|||.||||..|.|||.||||..||| ||.||.|.|||
BPUM_1524___y 50 GGATCTTGTTTATTGTCATCATCCCATTGATTGTGCTTGTGTTA------ 93
BSNT_02650___ 85 GGGGGGATTG----------TTCTTTGGGCTGCTGGTATCAATGTCATAA 124
|.||.|| ||.|.|| ||.|||.|..||.|.|..|
BPUM_1524___y 94 ---GTGACTGGCACAATCCTTTATATG----GCAGGTTTTGATCTAAAGA 136
BSNT_02650___ 125 AGCCGATACAGGATGCTGCGGCAAAAACGCCGG--TTCTTAAAGAA---- 168
|||||.|.|| |||.|..|||| .|| ||.|
BPUM_1524___y 137 AGCCGCTCCA------------AAACATTCCGGGCGTC----AGCAGTTT 170
BSNT_02650___ 169 --TTGGTCC--CTGAAA--CCGAAA-------------ATAAAAAAGGCG 199
|||||.| .|||.| ||.||| ||||.|
BPUM_1524___y 171 GGTTGGTTCAGATGACACGCCTAAAACGTCATCTTCACATAATA------ 214
BSNT_02650___ 200 CAGCATCAAGTAAG-GATAGCAGTAAT--ACGGCAGCTCTGGAAAAGACC 246
|||| ||| ||| ||||.|.| || |..|||.||||||||
BPUM_1524___y 215 ----ATCA---AAGCGAT-GCAGAAGTGAAC----GAACTGAAAAAGACC 252
BSNT_02650___ 247 ATTAAGGATCAAAAAAGTGAAATCAGT-ATATTG---AATAAAGATTTAG 292
|||||.||.|||||||.||||.| | |.|||| || |||||.|||.
BPUM_1524___y 253 ATTAAAGAGCAAAAAAATGAACT---TGAAATTGCACAA-AAAGACTTAA 298
BSNT_02650___ 293 AAACAAGTAAATCAGAAATCGATAGGCTCAATCAAAAGATCCGTTCACTT 342
||||||||.|...|||.||..|.||.||.||||||||.|||.||||||||
BPUM_1524___y 299 AAACAAGTGATGAAGAGATTAAAAGACTGAATCAAAAAATCAGTTCACTT 348
BSNT_02650___ 343 GAAAAGACGGCTGAGGAT----CAAAAAA----------------AG-TC 371
|||||.||..||||..|| ||||.|| || ||
BPUM_1524___y 349 GAAAAAACATCTGAAAATGATGCAAATAATAAGTCTTCGAATGACAGTTC 398
BSNT_02650___ 372 ATCAGA-------------------AGATCA------------------- 383
||||.| |.||||
BPUM_1524___y 399 ATCAAACAACAGCTCATCAAGCGATACATCAAGTAATAATGCGTCAGGGA 448
BSNT_02650___ 384 ----TACTGAAGGATCAGCAGACTC------GAAAGCTTCTTCTGAAAAT 423
|.||||.||..||||||.||| ||||.|| |||.
BPUM_1524___y 449 CAACTTCTGATGGGGCAGCAGCCTCTAACCAGAAACCT--------AAAG 490
BSNT_02650___ 424 GACAAAGTGATCAGTGTGTACAAAAGCATGGA--CAGCGGAAAGGCTGCT 471
|..|.|.||.| |||.|.||..||||.||||| ||| ||||| .|.||.
BPUM_1524___y 491 GGAAGATTGCT-AGTATCTATGAAAGTATGGATGCAG-GGAAA-TCCGCC 537
BSNT_02650___ 472 AAAATTATTGCCCAATTAAAGGAGCAAGAAGCACTGAA-AATATTGAATG 520
||||||.|..|..||||||..||..||||.|||.|||| |.|.||||| |
BPUM_1524___y 538 AAAATTTTATCAGAATTAAGTGATAAAGAGGCATTGAAGATTCTTGAA-G 586
BSNT_02650___ 521 GCCTAAGCAAAAAGCAGCTTGCTGACATATTGGCGAAAATGACTCCTGAG 570
..|||||||||||..|.||..|.||||||||.||.|||.|.||.|||.||
BPUM_1524___y 587 AGCTAAGCAAAAATAAACTAACAGACATATTAGCAAAACTAACACCTCAG 636
BSNT_02650___ 571 CAAGCAGCAACCTATACAGAAAAAATTGC-TGCCAGCCAAGAATAG---- 615
.|.|||||.||.|.||| ||||.| || |||.|...||||| ||
BPUM_1524___y 637 AAGGCAGCTACGTTTAC-GAAAGA---GCTTGCTAAAAAAGAA-AGTGAA 681
BSNT_02650___ 615 ------------------ 615
BPUM_1524___y 682 AATGGGGGTGGACAATAA 699
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