Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02665 and BPUM_1533

See Amino acid alignment / Visit BSNT_02665 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:16
# Commandline: needle
#    -asequence dna-align/BSNT_02665___fliZ.1.24716.seq
#    -bsequence dna-align/BPUM_1533___fliZ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02665___fliZ-BPUM_1533___fliZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02665___fliZ-BPUM_1533___fliZ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02665___fliZ
# 2: BPUM_1533___fliZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 734
# Identity:     430/734 (58.6%)
# Similarity:   430/734 (58.6%)
# Gaps:         148/734 (20.2%)
# Score: 1176.5
# 
#
#=======================================

BSNT_02665___      1 TTGAAAAAGAG-TCAATATTTTATCGTTTTTATTTGTTTTTTCGTTTTAT     49
                     ||||||||..| |..||| |.|||.|...|.||..|||||.|..||||.|
BPUM_1533___f      1 TTGAAAAAACGTTTGATA-TGTATAGCAATGATCAGTTTTATGCTTTTCT     49

BSNT_02665___     50 TCAGTGTACATCCGATTGC----------------TGCTGCCGCGGCAGA     83
                     |.|         ||| |||                |||||...|...|||
BPUM_1533___f     50 TGA---------CGA-TGCAACCCGCCTCACTGTTTGCTGAAACAAAAGA     89

BSNT_02665___     84 CTCTGATAATTCAACTGTAAACGAATGGTTTCAAAAGAAAGATGAAAAAA    133
                     ..||||.|||...||.||.||.||.|||      |..|||||.||.||||
BPUM_1533___f     90 TCCTGAAAATGGCACAGTGAATGACTGG------ATCAAAGAAGAGAAAA    133

BSNT_02665___    134 CTGCAGATCAATCAGAGCAAAAG---AAAGAAAAAACAACAAAAACTGCT    180
                       ||||      ||    |||||   |.||||||.|||||   .||||..
BPUM_1533___f    134 --GCAG------CA----AAAAGGATACAGAAAAGACAAC---CACTGAC    168

BSNT_02665___    181 GATGAGACGGA---GGGAGCGG-------CTGCTCCTTCTGTCTCAGCTT    220
                     .||.|.|||.|   ||.||..|       || ||.||||||||||...|.
BPUM_1533___f    169 AATCAAACGAATCCGGCAGAAGAAGTTCCCT-CTTCTTCTGTCTCCATTA    217

BSNT_02665___    221 TTGATTTTGTAAAGATGATTTTCGCTTTACTGTTTGTTATCGCGCTGATT    270
                     |.||||||||.||.||||||...||||||||.|||||.|||..|||.||.
BPUM_1533___f    218 TGGATTTTGTCAAAATGATTGGTGCTTTACTTTTTGTCATCCTGCTTATA    267

BSNT_02665___    271 TACGGGCTGGT------------TAAGCTCATGAACAAAAGAAATCGGCT    308
                     ||.||..||||            |||||             |||.|.|||
BPUM_1533___f    268 TATGGATTGGTGAGATTTGTTGGTAAGC-------------AAAACCGCT    304

BSNT_02665___    309 --CCTAAAGCCTTTTCAATATGTTGAAAATATTGGCGGCACATCGGTCGG    356
                       |.|||| ||.||||..|||||||||||||||||.||.||..||||.||
BPUM_1533___f    305 TACTTAAA-CCATTTCGCTATGTTGAAAATATTGGTGGAACGACGGTAGG    353

BSNT_02665___    357 CCAGAACAGATCCATACAATTGATCAAGGTCGGGAAAAGTGTGCTCGTCG    406
                     |||.|||.|.||..|.||..|.|||||.||.||.|||.|.||..|.||.|
BPUM_1533___f    354 CCAAAACCGTTCAGTCCAGCTTATCAAAGTGGGCAAACGAGTATTAGTTG    403

BSNT_02665___    407 TCGGTGTAGGAGAGACGATCCAGCTGCTGAAAGAAATTGAGGATGAAAAA    456
                     ||||.||||..||..|||||||||||||.|||||||||||.||||||.||
BPUM_1533___f    404 TCGGAGTAGCGGACTCGATCCAGCTGCTAAAAGAAATTGATGATGAACAA    453

BSNT_02665___    457 GAGAT-TGAAGTCATTCTCAGTCAGCATGAAGAGGCAATGTCAAGCAAAA    505
                     || || |||||..||..||...||..|.|||||.||.|||..|||.||||
BPUM_1533___f    454 GA-ATGTGAAGCGATCGTCCAACAATACGAAGAAGCGATGGAAAGTAAAA    502

BSNT_02665___    506 TAGA-GTGGCAAAAGTTTGTGAAGCCGCTTAAGAGTTCTGAACATC----    550
                     .||| .|..|||||.|         ||.|.||.|.|||   |||||    
BPUM_1533___f    503 CAGATTTACCAAAAAT---------CGTTCAAAAATTC---ACATCTCAG    540

BSNT_02665___    551 ----------AGCCGCAG-CAAAAACTGCCTTCATTTTCAAAAGCATTAA    589
                               ||...||| |||..||| .||||.|||||   |||     
BPUM_1533___f    541 ATAAAGAAAAAGGATCAGCCAACCACT-TCTTCTTTTTC---AGC-----    581

BSNT_02665___    590 AAGAGCAACTTGAA-------------GAGTTAAAACAAAACCGTTCTGA    626
                          |||.|||||             ||.||.|||.|.|.||..||.||
BPUM_1533___f    582 -----CAATTTGAAGGCACAGCTAGCCGAATTGAAAAAGACCCAATCAGA    626

BSNT_02665___    627 AGGAAAGAAGAAAGGCCCACGTCATCATGAATGA    660
                     ||..|..|||||||||||....||..||||||||
BPUM_1533___f    627 AGTCAGAAAGAAAGGCCCGAAACAAAATGAATGA    660


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