Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02671 and BPUM_1537

See Amino acid alignment / Visit BSNT_02671 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:16
# Commandline: needle
#    -asequence dna-align/BSNT_02671___flhB.1.24716.seq
#    -bsequence dna-align/BPUM_1537___flhB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02671___flhB-BPUM_1537___flhB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02671___flhB-BPUM_1537___flhB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02671___flhB
# 2: BPUM_1537___flhB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1142
# Identity:     791/1142 (69.3%)
# Similarity:   791/1142 (69.3%)
# Gaps:         112/1142 ( 9.8%)
# Score: 2678.5
# 
#
#=======================================

BSNT_02671___      1 ---ATG---AAGCTTAGAGTTGACCTGCAGTTTTTTGCGGGAGAGAAGAC     44
                        |||   |.|||||||.|.|||.||||.|||||.||.||.||.||.||
BPUM_1537___f      1 ATGATGACAAGGCTTAGACTAGACTTGCAATTTTTCGCAGGTGAAAAAAC     50

BSNT_02671___     45 AGAAAAAGCAACTCCGAAAAAACGGAAGGATACGCGAAAAAAAGGGCAGG     94
                     ||||||||||||.||||||||..||.|.|||.|.||.||||||||.||||
BPUM_1537___f     51 AGAAAAAGCAACGCCGAAAAAGAGGCAAGATTCACGTAAAAAAGGTCAGG    100

BSNT_02671___     95 TAGCCAAAAGCTCGGATGTCAATACCGCCGTTTCTTTACTGGTAAT----    140
                     |.||||||||..|.||.||||||||.|||.|.||.||.||..||||    
BPUM_1537___f    101 TTGCCAAAAGTACCGACGTCAATACAGCCATCTCATTTCTATTAATCTTT    150

BSNT_02671___    141 -----ATTCCTTTCGCTTATTGCAATTGGTCCGTATATGAGAGACAGGC-    184
                          ||||.|||      ||   |||||.||.|.|||||.|||   || 
BPUM_1537___f    151 TTATCATTCTTTT------TT---ATTGGGCCTTTTATGAAAGA---GCG    188

BSNT_02671___    185 ------TGCTGTCATTCATAGAAACATTTTAT-----ACCGAATCGCTCA    223
                           |||..|||||    |||...||||||     |.|||  .|||  
BPUM_1537___f    189 TATTATTGCGCTCATT----GAACGTTTTTATTCAACAACGA--TGCT--    230

BSNT_02671___    224 CAATGA-----AGCTCTCAGAATCAAATGTGCATACATTGTTTGT----C    264
                      |||||     |||.|     |||.|||.|.|||..|.|.|||||    .
BPUM_1537___f    231 -AATGAAAGTTAGCAC-----ATCTAATATTCATCAACTATTTGTGGAAT    274

BSNT_02671___    265 AGCTTATTAAAGGATATGGG---------CAT---AATACTCGCACCGAT    302
                     .||||    .||||.|..||         |||   ||||||.|       
BPUM_1537___f    275 TGCTT----CAGGAAACAGGGCTCCTCCTCATGCCAATACTTG-------    313

BSNT_02671___    303 TTTGCTTGTTGCTCTTGTTGCAGGAGTCGTAAGCAACTATATGCAGGTTG    352
                          .|||||.|.|..|.|||||..|..|.||.||||||.||||.||||
BPUM_1537___f    314 -----GTGTTGGTATGCTGGCAGGGATTATCAGTAACTATTTGCAAGTTG    358

BSNT_02671___    353 GGTTCTTATTTTCTGCTGAAGTGATACAGCCTAAGCTTGAAAAACTGGAT    402
                     |.||..|.|||||..|.|||||.||..|.||.||..|.||||||||.|||
BPUM_1537___f    359 GCTTTCTCTTTTCGACAGAAGTAATCAAACCAAAATTAGAAAAACTCGAT    408

BSNT_02671___    403 CCGATCAAAGGCTTTAAACGAATATACAGTATGAGGGCGATTGTAGAGCT    452
                     ||.||||||||.||||||||||||||||||||..|.||..|.|||||.||
BPUM_1537___f    409 CCAATCAAAGGGTTTAAACGAATATACAGTATTCGAGCCCTCGTAGAACT    458

BSNT_02671___    453 GATT-AAATCAATTTTGAAAATCGTAGTCGTCGGTTTTGCGGCTTTTGCT    501
                      ||| |||||.|||||.|||||.|...|..|.|||||||||.|.|||..|
BPUM_1537___f    459 -ATTAAAATCCATTTTAAAAATTGGTTTAATTGGTTTTGCGACATTTATT    507

BSNT_02671___    502 GTGCTTTGGCTGCATTATGGAGAAATTCTCCGGCTTCCTCTCCTGACACC    551
                     |..||||||.||||.|.||..|||||.||..||||||||.|.||.|||.|
BPUM_1537___f    508 GCACTTTGGATGCACTTTGACGAAATCCTAAGGCTTCCTTTACTAACAGC    557

BSNT_02671___    552 CGAAGAGGCACTATC-TTTCGTTTCAAAACTCACTTTGTGGATGGGACTA    600
                     .||.||..|.|| || ||||||..|||...|.||.|||...|||||.|||
BPUM_1537___f    558 AGAGGAAACTCT-TCATTTCGTGGCAAGTATGACCTTGATTATGGGGCTA    606

BSNT_02671___    601 AGCGGTGCAGGCGCTTTATTAAT--TCTT-GCTGGTCTTGACTATTTATA    647
                     ...|..|||||.|||   .|.||  |||| ||.||.|||||.|||.|.||
BPUM_1537___f    607 TATGCAGCAGGTGCT---CTCATGGTCTTAGCAGGGCTTGATTATATGTA    653

BSNT_02671___    648 TCAGAGATTTGATTATGAGAAAAACATCAAAATGTCAAAACAAGATATAA    697
                     |||||.||||||||||||.||||||.|....|||||.||||||||.||.|
BPUM_1537___f    654 TCAGAAATTTGATTATGAAAAAAACTTACGGATGTCCAAACAAGACATCA    703

BSNT_02671___    698 AAGACGAGTACAAAAAATCTGAAGGTGACCCGATTATTAAGTCTAAAATT    747
                     ||||.|||||.||||||||.||.|||||||||.|.||.||.||.||.|||
BPUM_1537___f    704 AAGATGAGTATAAAAAATCAGAGGGTGACCCGCTCATAAAATCAAAGATT    753

BSNT_02671___    748 AAACAAAGACAGCGGGAAATGGCGATGAGGCGGATGATGCAGGAAGTTCC    797
                     |||||..|.||||||||||||||.|||||.|||||||||||||||||.||
BPUM_1537___f    754 AAACAGCGTCAGCGGGAAATGGCCATGAGACGGATGATGCAGGAAGTCCC    803

BSNT_02671___    798 AAAAGCAGATGTCATTATCACAAACCCGACTCACTATGCGATTGCTTTGA    847
                     ||||||.||.|||||.||.||||||||.||.||.|||||.||||||.|||
BPUM_1537___f    804 AAAAGCGGACGTCATCATTACAAACCCAACCCATTATGCCATTGCTCTGA    853

BSNT_02671___    848 AATATGATGAAGAAAAAATGGACGCTCCTTATATTGTTGCAAAAGGTGTC    897
                     |||||||.||||||||.||||||||.||.|.|.||||.|||||.|     
BPUM_1537___f    854 AATATGACGAAGAAAAGATGGACGCGCCCTTTGTTGTGGCAAAGG-----    898

BSNT_02671___    898 GACCA-----CCTTGCGTTAAAAATCAGGAAAATTGCTAAAGAGCATGAT    942
                     ||.||     ..|.||.||.|||||.||.|..|||||.||||||||.|||
BPUM_1537___f    899 GAACAGATATTTTGGCTTTGAAAATTAGAACGATTGCGAAAGAGCACGAT    948

BSNT_02671___    943 GTCATGATGGTAGAAAACAGACCGCTTGCCCGTGCGTTATATGATCAGGT    992
                     .|.||||..|||||||||.|.|||||.||.|||||..|.|||||||||||
BPUM_1537___f    949 ATTATGACCGTAGAAAACCGGCCGCTCGCTCGTGCACTCTATGATCAGGT    998

BSNT_02671___    993 GGAAATTGACCAGGCAGTGCCGGAAGAATTTTTTAAAGTTTTAGCAGAAA   1042
                     .||.||||||||.||.|||||.||.||||..|||||.|...|.|||||||
BPUM_1537___f    999 CGACATTGACCAAGCGGTGCCAGAGGAATACTTTAAGGCAATCGCAGAAA   1048

BSNT_02671___   1043 TTCTGGCTTACGTATATAAAACAAAACAAAA-AGTATATTGA   1083
                     ||.|.|||||.||.||||||||.|||||||| |.|.|| |||
BPUM_1537___f   1049 TTTTAGCTTATGTTTATAAAACGAAACAAAAGATTTTA-TGA   1089


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