Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02673 and BPUM_1539

See Amino acid alignment / Visit BSNT_02673 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:16
# Commandline: needle
#    -asequence dna-align/BSNT_02673___flhF.1.24716.seq
#    -bsequence dna-align/BPUM_1539___flhF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02673___flhF-BPUM_1539___flhF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02673___flhF-BPUM_1539___flhF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02673___flhF
# 2: BPUM_1539___flhF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1210
# Identity:     744/1210 (61.5%)
# Similarity:   744/1210 (61.5%)
# Gaps:         203/1210 (16.8%)
# Score: 1939.5
# 
#
#=======================================

BSNT_02673___      1 ATGAAAATAAAAAAATTTACTGCTGCTTCAATGCAAGAAGCTGCACTTCT     50
                     ||||||||.||||||.|.||.||...|||||||||.|||||..|..|||.
BPUM_1539___f      1 ATGAAAATGAAAAAAATCACAGCGAATTCAATGCAGGAAGCAACGATTCA     50

BSNT_02673___     51 CATCAGAAAAGAGTTAGGTAATGAAGCGGTCATATTAAATTCAAAAAAAA    100
                     .||.||..|..||.|.||.||.||.||.|||||.||||||||.||||...
BPUM_1539___f     51 AATTAGGCAGCAGCTTGGGAAGGATGCCGTCATCTTAAATTCCAAAACCG    100

BSNT_02673___    101 TTAAAAAGCGAAA---AT--GGTTT---GGCCTCATCAACAAGCCTGCTG    142
                     ||...||.|||||   ||  |||||   |    .|.||.|||  .||  |
BPUM_1539___f    101 TTGTGAAACGAAAGCTATTCGGTTTAAAG----AAACAGCAA--ATG--G    142

BSNT_02673___    143 TTGAAGTAATCGCCGTATTGGATCAGGACTTTCTTGAGAAAAAAACGCCT    192
                     |||||||.||.||.||..|||||||.||.|||     |||.|||..||  
BPUM_1539___f    143 TTGAAGTGATTGCAGTGCTGGATCAAGATTTT-----GAAGAAAGAGC--    185

BSNT_02673___    193 CAG----AAGG----CAG-CTGAACCGAAACAAAC-----------ATT-    221
                       |    ||||    ||| |||..||        |           ||| 
BPUM_1539___f    186 --GGGTAAAGGTGGACAGCCTGCGCC--------CCCTCTTCCAGTATTT    225

BSNT_02673___    222 ---AAAAACTCCGGTCAGCAG-------TCCGA---AAATA---------    249
                        |||||    ||  |||||       .||||   |||.|         
BPUM_1539___f    226 CCGAAAAA----GG--AGCAGGTTCAACACCGACCTAAAGAGCCGTCTCT    269

BSNT_02673___    250 -------GAGG-AGAGAA--CA-TATCCCCCTCAAATTCCGGCGCAACAG    288
                            |||| ||.|||  || || ||.|.||||..||.|.||..|.|.
BPUM_1539___f    270 TGCTCCTGAGGCAGTGAAACCAGTA-CCTCTTCAAGCTCAGCCGTTAGAA    318

BSNT_02673___    289 GA-GCTAGG--TGATTTTTCAGCATATCAATCTG---TACTTCCTGAGCC    332
                     .| ||.|||  |||    .|.||||     .|||   ||.|.|||||.||
BPUM_1539___f    319 TATGCGAGGAATGA----GCGGCAT-----GCTGGTATATTGCCTGACCC    359

BSNT_02673___    333 GCT----GCGAAAAGCAGAAAAGCTTTTGCAAGAAACAGGGATCAAAGAG    378
                     .||    || ||..|...|||||||       |||    |||||||  .|
BPUM_1539___f    360 TCTCATGGC-AATCGATCAAAAGCT-------GAA----GGATCAA--GG    395

BSNT_02673___    379 TCTACGAAAACGAACACTC-TGAAAAAATTGCTTC----GCTTCTCTGTT    423
                     ||| .||..|.| .||.|| |||..||  |||.||    |    |||.||
BPUM_1539___f    396 TCT-TGATGATG-CCATTCGTGACGAA--TGCCTCAAAGG----TCTTTT    437

BSNT_02673___    424 GAAGCAGGCGGCT-TGACTGAAGAAAATGTTGTCGGCAAACTTCAGGAAA    472
                     .|.|.|||..||| |.|..|||||           ||||| ||||..||.
BPUM_1539___f    438 AACGAAGGGCGCTGTCAAGGAAGA-----------GCAAA-TTCAAAAAG    475

BSNT_02673___    473 TACT-------ATGC-----GATACGCTGCCCGCAGCAGACAAGTGGCAG    510
                     .|||       .|||     ||||.|||| |||...||.||...||  |.
BPUM_1539___f    476 AACTTGAACAACTGCTGACAGATATGCTG-CCGTCTCACACTTCTG--AT    522

BSNT_02673___    511 GAGCC---AATTCATTCAAAATATATCGTTCTCTTTGGTTCAACAGGGGC    557
                     ||.||   .||||.|||.|||||.||.||.||.||||||||.||.|||||
BPUM_1539___f    523 GATCCGATGATTCGTTCTAAATACATTGTGCTGTTTGGTTCGACTGGGGC    572

BSNT_02673___    558 TGGTAAAACAACTACACTGGCTAAACTCGCAGCCATATCTATGC--TTGA    605
                     ||||||||||||.||..|.||.||.|||||.||||.|.|  .||  ||.|
BPUM_1539___f    573 TGGTAAAACAACAACGATTGCAAAGCTCGCTGCCAAAAC--GGCCATTCA    620

BSNT_02673___    606 AAAACATAAAAAAATCGCTTTTATTACAACAGATACGTATCGTATTGCAG    655
                     .||.||.||.|||||||||||||||||||||||||||||.||.||.||||
BPUM_1539___f    621 GAAGCAAAAGAAAATCGCTTTTATTACAACAGATACGTACCGAATAGCAG    670

BSNT_02673___    656 CTGTTGAACAGTTGAAAACATACGCTGAACTGCTGCAGGCTCCTCTGGAA    705
                     |..|.|||||..||||||||||.||.|||||.||..|.||.||.||.||.
BPUM_1539___f    671 CAATCGAACAACTGAAAACATATGCAGAACTACTTAATGCACCGCTTGAG    720

BSNT_02673___    706 GTTTGCTATACAAAAGAAGAATTTCAGCAGGCGAAGGAGTTATTTTCTGA    755
                     |||||.|||.|.|.|||.||.|||....|.||..|.|||..||||...||
BPUM_1539___f    721 GTTTGTTATTCGAGAGAGGATTTTGTAAAAGCTCAAGAGACATTTAAAGA    770

BSNT_02673___    756 GTATGATCATGTGTTTGTTGATACAGCCGGAAGAAACTTCAAGGACCCGC    805
                     ||||||||||.|.||.||.||.|||||.||..|.|||||.||.||   ..
BPUM_1539___f    771 GTATGATCATATTTTCGTAGACACAGCGGGTCGTAACTTTAAAGA---AG    817

BSNT_02673___    806 AA---TACATTGATGAACTGAAAGAAACGATTCCTTTTGA-GAGCAGCAT    851
                     ||   ||.||..|.||.||||.|||.|..|||||.||||| || .|||||
BPUM_1539___f    818 AAGCGTATATCAAAGAGCTGACAGACATCATTCCATTTGATGA-AAGCAT    866

BSNT_02673___    852 TC--AGTCATTTCTTGTTTTATCCGCGACTGCAAAATATGAAGATATG-A    898
                     ||  |||  ||.||.||..|....|||||..||||.|||.|.||.||| |
BPUM_1539___f    867 TCAAAGT--TTCCTAGTGATGAGTGCGACCTCAAAGTATCAGGACATGAA    914

BSNT_02673___    899 AGCATATTGTCAAACGGTTTTCATC-CGTCCCTGTCAATCAGTATATTTT    947
                     ||| .||.||.|||| |||||.|.| |||..|..||.||||.|.||||||
BPUM_1539___f    915 AGC-CATGGTGAAAC-GTTTTGAACACGTTTCAATCGATCAATTTATTTT    962

BSNT_02673___    948 TACGAAAATAGATGAAAC-GACTTCCTTAGGTTCTGTATTTAATATACTG    996
                     |||.|||.|||||||||| ||| .|..|.||..|..|.|||.|.||..|.
BPUM_1539___f    963 TACAAAAGTAGATGAAACAGAC-ACGATGGGCACCATTTTTCAAATCATT   1011

BSNT_02673___    997 GCAGAATCAAAAATAGGTGTCGGGTTTATGACAAACGGACAGAATGTGCC   1046
                     |||||.||..||||.||..|.||.|||.|.|||||.||.||.|||||.||
BPUM_1539___f   1012 GCAGACTCTCAAATTGGACTTGGCTTTTTAACAAATGGTCAAAATGTTCC   1061

BSNT_02673___   1047 TGAGGATATAC---AGACTGTATCTCCACTTGGTTTTGTGAGGATG--CT   1091
                     |||||||||.|   ||   |..|||||.||||..||....||||||  ||
BPUM_1539___f   1062 TGAGGATATTCTTGAG---GGCTCTCCTCTTGAATTAACAAGGATGGTCT   1108

BSNT_02673___   1092 GTGCAGATGA   1101
                      |.|| ||||
BPUM_1539___f   1109 -TACA-ATGA   1116


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