Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02675 and BPUM_1540

See Amino acid alignment / Visit BSNT_02675 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:17
# Commandline: needle
#    -asequence dna-align/BSNT_02675___ylxH.1.24716.seq
#    -bsequence dna-align/BPUM_1540___ylxH.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02675___ylxH-BPUM_1540___ylxH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02675___ylxH-BPUM_1540___ylxH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02675___ylxH
# 2: BPUM_1540___ylxH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1039
# Identity:     576/1039 (55.4%)
# Similarity:   576/1039 (55.4%)
# Gaps:         281/1039 (27.0%)
# Score: 1520.0
# 
#
#=======================================

BSNT_02675___      1 ---ATGAA--CAGATATGACCAAGCAGCAACTTTACGGGCGAAAATGGAA     45
                        |||||  |     |||||||||||.|..|||              ||
BPUM_1540___y      1 ATGATGAAGCC-----TGACCAAGCAGAAGGTTT--------------AA     31

BSNT_02675___     46 AAACGTGAGCGCGTTCTGCCAATGGTTTAT-------TCACA--------     80
                     .||    |||.|||||..|.||      ||       |||||        
BPUM_1540___y     32 GAA----AGCTCGTTCAACAAA------ATCAAACGATCACACCAGCTCC     71

BSNT_02675___     81 -------AAAAGCG--------AAGACACTTGCTGTCATCAGCGGCAAGG    115
                            |.|||||        ||.||..||||||||||.|||||.||.|
BPUM_1540___y     72 TCTTGGTATAAGCGGACAGGCAAAAACCATTGCTGTCATGAGCGGTAAAG    121

BSNT_02675___    116 GCGGTGTCGGAAAATCCAATATTACCTTAAATATGGCACTTGCGCTC-CA    164
                     ||||.||.||||||||.|||.|.||..|.|||||||||||..|..|| ||
BPUM_1540___y    122 GCGGGGTTGGAAAATCGAATTTGACGCTGAATATGGCACTATCTATCGCA    171

BSNT_02675___    165 GGATAAAGGTAA--GAAGGTGCTGCTCATCGACCTTGATATCGGGATGGG    212
                      .||..||||||  ||  |||.|..||||||||||||||.|.||.|||||
BPUM_1540___y    172 -AATGCAGGTAAACGA--GTGTTAGTCATCGACCTTGATTTTGGTATGGG    218

BSNT_02675___    213 GAACATTGATATATTAATAGGAAATTCATCGTCTGCCACGATAATTGATG    262
                     |||.||||||||.|||.||||.||..|||||.||..|.|.||..|.||||
BPUM_1540___y    219 GAATATTGATATTTTACTAGGGAAAACATCGACTAGCTCTATTTTAGATG    268

BSNT_02675___    263 TTTT-------AACCGATCGT---AAGC--CTTTG-CTC----------C    289
                     ||.|       ||...|||.|   ||||  ||.|| |||          |
BPUM_1540___y    269 TTCTCGTCAGGAAGAAATCCTTCCAAGCGGCTATGACTCAAGGAACGAAC    318

BSNT_02675___    290 AGTCATTATCCATTGGCCCAAAGGGTTTGCGGTATATATCAGGGGGAACC    339
                     |..|.||||                       ||.||.||.||.||||.|
BPUM_1540___y    319 AACCTTTAT-----------------------TACATTTCTGGCGGAAGC    345

BSNT_02675___    340 GGTCTTGATGTGATGTTTCAGCTCGATCAGAGAA-----AATGGACGTTT    384
                     ||.|||||...|.|||||    || .|.|||.||     |||||.||||.
BPUM_1540___y    346 GGACTTGAACAGCTGTTT----TC-TTTAGATAAAGATCAATGGTCGTTC    390

BSNT_02675___    385 TTT-----GCCAAT-----GAACTTTCTCATGCATTAAGCCAGTTCGATT    424
                     |||     |..|||     |||     |.|||||     |.|.||.||||
BPUM_1540___y    391 TTTCTAGAGGAAATGGAAAGAA-----TGATGCA-----CGACTTTGATT    430

BSNT_02675___    425 ATGTGCTGTTTGATATGGGAGCGGGTTTATCAAAAGATCAACTGCCTTTT    474
                     .|.|..|.|||||||||||.||.|||||.||||||||||||||.||||||
BPUM_1540___y    431 GTATCTTCTTTGATATGGGGGCTGGTTTGTCAAAAGATCAACTACCTTTT    480

BSNT_02675___    475 ATTTTATCAGCAGAAGATATTTTGATTATAACAACTCCCGAGCCGACGGC    524
                     .||||||||||||.|||..||.|..||.|.|||||.||.||.||.||..|
BPUM_1540___y    481 GTTTTATCAGCAGGAGAAGTTGTAGTTGTGACAACGCCGGAACCAACATC    530

BSNT_02675___    525 CATTTTGGACGCATACAGCGCTGTCAAGCACTTGG----------TTTTG    564
                     .||..||||.||.||||||||..|.||.||.||.|          .||||
BPUM_1540___y    531 AATCATGGATGCCTACAGCGCCATTAAACATTTAGCGATTCATCAGTTTG    580

BSNT_02675___    565 ACAGAAAATAAGCTTT--CAATGAAGGTGGCTGTCAATCGGTG-------    605
                           ||.||.||.|  .|||.|      .||||||.|||||       
BPUM_1540___y    581 ------AACAATCTGTGCAAATCA------TTGTCAACCGGTGTAAAACC    618

BSNT_02675___    606 CCGTGACCAAAAGGAAGGGCTTGACGCTTTTGCCCGCCTCTCCCGTACAA    655
                     ||||.|       ||||||...||..|            ||..||.| ||
BPUM_1540___y    619 CCGTCA-------GAAGGGTCAGAAAC------------CTATCGGA-AA    648

BSNT_02675___    656 T------------TCATATGTTTTTGGATGTTCAGGTTCAG---------    684
                     |            |||.||..||     |.||||    |||         
BPUM_1540___y    649 TTAGCAGGAGTCGTCACATCATT-----TCTTCA----CAGAAAACTAGT    689

BSNT_02675___    685 -TTTGCCGGTTCCGTTTCTGACGATGTGATCGTGAG-----CAAAGCGGT    728
                      |||||.|||.|.||..|.||     |||||.||.|     .|||||.||
BPUM_1540___y    690 ATTTGCTGGTGCTGTCCCGGA-----TGATCCTGCGGTTCCAAAAGCAGT    734

BSNT_02675___    729 TGTCGAACAGGTTCCTTTTTTCATAAAAAGC--CCTC-----AGGC----    767
                     .|..|||||..||||.||||  |||..||||  ||||     ||||    
BPUM_1540___y    735 GGCTGAACAAATTCCATTTT--ATATGAAGCAGCCTCATTCAAGGCTGAG    782

BSNT_02675___    768 -AAAAGCCAGCCG-GTCAGTCCGTATTTTAGCGG--ACGCCTTGTTTGGA    813
                      ||||      || .|.||     ||..|.||||  ||.|.||.|   .|
BPUM_1540___y    783 TAAAA------CGATTAAG-----ATGCTGGCGGAAACACTTTAT---CA    818

BSNT_02675___    814 AGAGAAGAAACGAGA--CACAAAGAAGACAAACAGACATTTATTGAGAAA    861
                     |.||.|||.|.||||  ||||.|| |||..|.||.||.|||||.||.||.
BPUM_1540___y    819 ACAGCAGATAAGAGAGGCACAGAG-AGAGCAGCATACGTTTATAGATAAG    867

BSNT_02675___    862 TTATCTTCTTTTTT---AATGAGGA----GGGCTTAA--    891
                     ||.||.||||||||   ||.|||||    ||.||.|.  
BPUM_1540___y    868 TTGTCCTCTTTTTTTAAAAGGAGGAAGGTGGACTCATGA    906


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