Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_02676 and BPUM_1541

See Amino acid alignment / Visit BSNT_02676 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:17
# Commandline: needle
#    -asequence dna-align/BSNT_02676___cheB.1.24716.seq
#    -bsequence dna-align/BPUM_1541___cheB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02676___cheB-BPUM_1541___cheB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02676___cheB-BPUM_1541___cheB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02676___cheB
# 2: BPUM_1541___cheB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1173
# Identity:     732/1173 (62.4%)
# Similarity:   732/1173 (62.4%)
# Gaps:         198/1173 (16.9%)
# Score: 2152.0
# 
#
#=======================================

BSNT_02676___      1 TTGATTCGTGTGCTTGTAGTTGATGATTCAGCTTTTATGAGAAAAATGAT     50
                     .|||||.|.|||||||||||.|||||.||.||.||||||.|||||.|.||
BPUM_1541___c      1 ATGATTAGAGTGCTTGTAGTAGATGACTCGGCCTTTATGCGAAAACTCAT     50

BSNT_02676___     51 AAGTGATTTTCTGA---CCGAGGAA-AAGCAGATAGAAGTAATCGGAACT     96
                     .|||||.||.||.|   |||||.|| ||    ||||||||..|||||||.
BPUM_1541___c     51 TAGTGACTTCCTAACTGCCGAGCAAGAA----ATAGAAGTCGTCGGAACG     96

BSNT_02676___     97 GCGAGAAACGGAGAAGAAGCGCTTAAGAA--GAT--------TGAATTAT    136
                     |||.||||.||.|||||.|| ||||| ||  |||        |||||   
BPUM_1541___c     97 GCGCGAAATGGGGAAGATGC-CTTAA-AACGGATCAAGGAACTGAAT---    141

BSNT_02676___    137 TAAAACCGGATGTTATTACTCTTGATGTTGAAATGCCGGTCATGAATGGG    186
                          ||.|||||..|.||..|.|||||.||||||||.||..|.|||||.
BPUM_1541___c    142 -----CCAGATGTCGTCACATTAGATGTGGAAATGCCTGTTTTAAATGGA    186

BSNT_02676___    187 ACAGATACGCTCCGCA-------AAATTAT---TGA----GATTTATAAC    222
                     |||||       .|||       |||||.|   |||    |      |.|
BPUM_1541___c    187 ACAGA-------AGCATTAAAACAAATTCTGGCTGAACACG------ACC    223

BSNT_02676___    223 TTGCCGGTCATTATGGTGTCTAGCCAGACCGAGAAAGGTAAAGAATGCAC    272
                     ||||| ||.|||||||||||.||||||||..||.||||.|||||.|..||
BPUM_1541___c    224 TTGCC-GTAATTATGGTGTCAAGCCAGACAAAGCAAGGGAAAGATTTAAC    272

BSNT_02676___    273 AATTAATTGTTTGGAGATCGGTGCCTTTGACTTTATCACAAAGCCATCAG    322
                     .||..||||.||.||..|.|||||.|||||||||.|||||||||||||||
BPUM_1541___c    273 CATCCATTGCTTAGAACTTGGTGCTTTTGACTTTGTCACAAAGCCATCAG    322

BSNT_02676___    323 GTTCAATATCTCTGGATCTATACAAAATTAAAGAACAATTAGTTGAGCGT    372
                     |....||.||.||.|||.||.|||||.|.|.||..|||.|.||.|||||.
BPUM_1541___c    323 GAAGTATTTCACTTGATTTACACAAAGTAAGAGGCCAAATTGTAGAGCGG    372

BSNT_02676___    373 GTCGTCGCGGCAGGACTTTCCGGCAAGCGGAAACGTCCTGTTTCCCAGAC    422
                     ||..|.||||||||.||    |.|||  |||||||..||           
BPUM_1541___c    373 GTGCTTGCGGCAGGGCT----GTCAA--GGAAACGCACT-----------    405

BSNT_02676___    423 AGTTCGGCCCGAACCTATTGTGCGTGCTGTCGT-TAAGCC--TGAATTAA    469
                               |||      |||| .|.|.||.| ||||||  || ||.||
BPUM_1541___c    406 ----------GAA------GTGC-CGGTTTCTTCTAAGCCGGTG-ATGAA    437

BSNT_02676___    470 G----CAAAC-------CGAAACCTGGCACG---------------GG--    491
                     |    |||.|       |.|.||||.||.||               ||  
BPUM_1541___c    438 GCCGTCAATCCCAGTGGCTACACCTCGCCCGCAAGCAGTAAAAAGCGGCT    487

BSNT_02676___    492 ----CAGACAAATTGTGTGTATCGGCACATCAACAGGCGGTCCACGAGCG    537
                         |.||.|.|||.|.|..|||||.||||||||.||.||.|||.|.||.
BPUM_1541___c    488 CACTCCGAAAGATTATTTCAATCGGAACATCAACGGGAGGGCCAAGGGCA    537

BSNT_02676___    538 TTACAA-AAGGTGATACCGAAGCTCCCTAAAGA-TTTGAACGCACCAGTG    585
                     .|.||| .||..|.|| |||||||.||.||.|| .|.|||..|.|||.| 
BPUM_1541___c    538 CTTCAACGAGTCGTTA-CGAAGCTGCCCAAGGACATAGAAGCCCCCATT-    585

BSNT_02676___    586 GTTG-TCGTTCAGCACATGCCTGAAGGGTTTACTGCTTCTTTGGCTGATC    634
                      ||| |.||.|||||.|||||.|.|||.|||||.||.||..|.|||..|.
BPUM_1541___c    586 -TTGATAGTGCAGCATATGCCGGCAGGATTTACGGCATCACTTGCTACTA    634

BSNT_02676___    635 GGCTGAATCATTTATCTGACATTCAGGTAAAAGAAGCAAAAGATGGTGAA    684
                     ||.|..|.|||||||||.|.|||..|.|.||||||||..|||||||.|| 
BPUM_1541___c    635 GGTTAGACCATTTATCTCAAATTTCGATTAAAGAAGCGCAAGATGGAGA-    683

BSNT_02676___    685 GCA--GCTCTTAACGGCTGT-GTTTACATAGCACCGGGCGGAAAAAACAT    731
                      ||  |||...||.|| .|| |.|||||||||.||.||.||||..||.||
BPUM_1541___c    684 -CATCGCTAAAAATGG-AGTAGCTTACATAGCGCCTGGTGGAATGAATAT    731

BSNT_02676___    732 ATC-CGTTATTAAAAA--------------CAGC-GAAGGACTCCAGGTT    765
                     .|| |.|.||.||.||              ||.| ||..|.||||||   
BPUM_1541___c    732 GTCACTTCATGAACAAGGGGCATCCTTAGTCATCAGACTGTCTCCAG---    778

BSNT_02676___    766 GTGCTTGATAACCATGACACCCCAAGCCGTCATAAACCATCTGCTGATTA    815
                                  |.|||||...|||||||||.|||||.||||.|.|.||
BPUM_1541___c    779 -------------AAGACACGGAAAGCCGTCACAAACCTTCTGTTAACTA    815

BSNT_02676___    816 TTTATT----CCGTTCTGTC-------GGGAAACTGACAGATTATGAAAA    854
                     ||||||    .||.||.|||       |||           |||.||.||
BPUM_1541___c    816 TTTATTTGAATCGATCAGTCATATAAAGGG-----------TTACGAGAA    854

BSNT_02676___    855 AGTAGCGGTTATCATGACCGGAATGGGCAGTGACGGCACTGCTGGGCTAA    904
                     |.|.||.||.||.|||||.||.|||||.|||||||||||.|..||..|.|
BPUM_1541___c    855 AATTGCTGTCATTATGACAGGCATGGGTAGTGACGGCACAGAAGGTGTCA    904

BSNT_02676___    905 AGGACATGCTAACAGCCGGCAATGTGAAAGCCATTGCGGAGTCTGAAGAA    954
                     |..|.|||.|..||..|||..||...||||.||||||.||....||||||
BPUM_1541___c    905 AAAAAATGGTCGCAAGCGGTCATACAAAAGTCATTGCAGAAAAAGAAGAA    954

BSNT_02676___    955 TCTTGTGTCGTATACGGGATGCCAAAAGCTGCTGTTAAAGCGGGTCT--C   1002
                     ||.|||||.||.|.|||.|||||.|||.|.|...|||||||.||.||  |
BPUM_1541___c    955 TCATGTGTTGTTTTCGGAATGCCTAAATCAGTCATTAAAGCAGGCCTTGC   1004

BSNT_02676___   1003 ATTCATGAGATTAAACATGTGGAAGATATCGCAGCAT-CCATCACAAGCT   1051
                     |  |||||.|..|..||||||||.||.|||||| ||| |.||.|.|||||
BPUM_1541___c   1005 A--CATGAAACAAGGCATGTGGATGACATCGCA-CATGCAATTATAAGCT   1051

BSNT_02676___   1052 GTGTGAAAAAAGAGAGGGTGTGA   1074
                     ...|||||||||||||||.||||
BPUM_1541___c   1052 CCATGAAAAAAGAGAGGGCGTGA   1074


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.