Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02681 and BPUM_1544

See Amino acid alignment / Visit BSNT_02681 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:17
# Commandline: needle
#    -asequence dna-align/BSNT_02681.1.24716.seq
#    -bsequence dna-align/BPUM_1544___cheC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02681-BPUM_1544___cheC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02681-BPUM_1544___cheC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02681
# 2: BPUM_1544___cheC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 642
# Identity:     214/642 (33.3%)
# Similarity:   214/642 (33.3%)
# Gaps:         357/642 (55.6%)
# Score: 697.5
# 
#
#=======================================

BSNT_02681         0 --------------------------------------------------      0
                                                                       
BPUM_1544___c      1 ATGAGCATTTTCAATGAAATAAAAGATGAACAGCTGGATGTATTAAGAGA     50

BSNT_02681         0 --------------------------------------------------      0
                                                                       
BPUM_1544___c     51 GGTTGGGAATATTGGAGCAGGCCACGCCGCGTCTGCTCTTGCCAGCCTAT    100

BSNT_02681         0 --------------------------------------------------      0
                                                                       
BPUM_1544___c    101 TGGATCGCAAAATAGATATGGCTGTTCCATTTGTCAAGGTTCTCTCGTTT    150

BSNT_02681         0 --------------------------------------------------      0
                                                                       
BPUM_1544___c    151 GAAGAGTTAATGGAATTCTTTGGCGGTGCAGACCTCCCAGTTGCAAGCAT    200

BSNT_02681         0 --------------------------------------------------      0
                                                                       
BPUM_1544___c    201 TTTCCTGCGAATGGAAGGAGATTTATCTGGCTCAATCTTTTTCATTATGC    250

BSNT_02681         0 --------------------------------------------------      0
                                                                       
BPUM_1544___c    251 CCTTTGAGCAAGCAGAGCAGTTTGTAAGAGAGCTTGTACGAGATCCGGCA    300

BSNT_02681         1 ------------------------------ATGAGCTCATCCGCTTTGCA     20
                                                   |||.|..|.||.||..|.||
BPUM_1544___c    301 TTTGATATTGATACTATTCACGAGCATGTGATGGGGACTTCAGCACTTCA    350

BSNT_02681        21 TGAACTGGGCAATATTTTAGCGGGGTCATATTTAACAGCTTTGGCGGATT     70
                     .||.|||||.|||||||||||.||.||.||||||.||||..|.||.||||
BPUM_1544___c    351 CGAGCTGGGAAATATTTTAGCAGGCTCTTATTTATCAGCCCTTGCCGATT    400

BSNT_02681        71 TGACGAAACTCCAGCTCTATCCAAGTGTTCCTGAAGT----CTCTTTGGA    116
                     |.||.|||.|.|||||..|.|||||||||||.||.||    |||    ||
BPUM_1544___c    401 TAACAAAATTGCAGCTTCACCCAAGTGTTCCAGATGTTACGCTC----GA    446

BSNT_02681       117 CATGTTCGGAGCAGTGATCAGCGAAGGGCTGATGGAGCTCAGTC----AG    162
                     .|||||||||||.||.||.||||||||..|.|||.|..|.||||    ||
BPUM_1544___c    447 TATGTTCGGAGCTGTCATTAGCGAAGGATTAATGCAATTTAGTCCTTTAG    496

BSNT_02681       163 GTTGGAGAACACGCCATTGTTGTCGACACGTCAATTTT---TGACCAAAG    209
                     ||    ||.||.||.|||||..|.||.||.||.|||||   |||.|||| 
BPUM_1544___c    497 GT----GATCAGGCAATTGTGATTGATACATCGATTTTTGATGATCAAA-    541

BSNT_02681       210 CCATCAGCAGGAGCTGAAAGCGCATATGTTTATGCTGCCGGACTATGATT    259
                       ||.||||.||||||||||...||||||||.|..|.||.||||.|||.|
BPUM_1544___c    542 --ATAAGCAAGAGCTGAAAGGAAATATGTTTCTATTACCAGACTTTGAAT    589

BSNT_02681       260 CATTTGAAAAGCTCTTTGTCGCCTTAGGTGCATCAT-TATGA    300
                     |.||||||||.||.||.|..||.||||||  |.|.| ||.  
BPUM_1544___c    590 CGTTTGAAAAACTATTCGAAGCATTAGGT--AACCTGTAA--    627


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