Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02694 and BPUM_1555
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:18
# Commandline: needle
# -asequence dna-align/BSNT_02694___yluC.1.24716.seq
# -bsequence dna-align/BPUM_1555___yluC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02694___yluC-BPUM_1555___yluC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02694___yluC-BPUM_1555___yluC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02694___yluC
# 2: BPUM_1555___yluC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1323
# Identity: 925/1323 (69.9%)
# Similarity: 925/1323 (69.9%)
# Gaps: 117/1323 ( 8.8%)
# Score: 3008.5
#
#
#=======================================
BSNT_02694___ 1 ------GTGAATACAGTTATAGCGTTTATCATTATTTTCGGAACGCTCGT 44
|||||||||||.||.||||||||.||||||||.|||||||||||
BPUM_1555___y 1 ATGTTCGTGAATACAGTGATTGCGTTTATTATTATTTTTGGAACGCTCGT 50
BSNT_02694___ 45 TTTCTTCCATGAACTGGGCCATTTATTGCTAGCCCAAAGAGCGGGAATTC 94
|||.|||||.||.||.|||||||||.|..|.||.||..|||||||.|||.
BPUM_1555___y 51 TTTTTTCCACGAGCTTGGCCATTTAATTATGGCGCAGCGAGCGGGGATTT 100
BSNT_02694___ 95 TCTGCCGTGAATTTGCGATCGGCTTCGGTCCAAAGATTTTTTCTTTCAAA 144
|.||||||||.||.||.||.||.||.||.||.||||||||.||.||.|||
BPUM_1555___y 101 TATGCCGTGAGTTCGCAATTGGTTTTGGGCCGAAGATTTTCTCCTTTAAA 150
BSNT_02694___ 145 AAAAATGAAACAGTTTATACGATCAGGCTGCTTCCGGTCGGCGGATTTGT 194
..|||.|||||.||||||||.||.||.|||||.||..|.|||||||||||
BPUM_1555___y 151 CGAAAGGAAACCGTTTATACCATTAGACTGCTCCCTATTGGCGGATTTGT 200
BSNT_02694___ 195 TCGTATGGCCGGCGAAGATCCGGAAATGATTGAGGTGAAACCCGG--ATA 242
|...|||||.||.||.||.||.|||.|.|||||..|.|||||.|| |||
BPUM_1555___y 201 TAAAATGGCGGGAGAGGACCCTGAAGTCATTGAAATTAAACCAGGTCATA 250
BSNT_02694___ 243 CACGGTCGGGCTTCTGTTTAATAAGGAAGATCAAGTTGAGAAAGTCATCA 292
|| ||.|||||..|.||.|||.||.||.||.||||.||.|||.||||..
BPUM_1555___y 251 CA--GTGGGGCTCTTATTCAATGAGCAAAATGAAGTAGAAAAAATCATTT 298
BSNT_02694___ 293 TCAATCAAAAGGAAAAATATCCGGATGCTTTAGTCATTGAAGTGGAAACA 342
|.|||.|.||.|||||||||||.|||||..|.|||||.||||||| |.||
BPUM_1555___y 299 TAAATGATAAAGAAAAATATCCTGATGCACTTGTCATCGAAGTGG-AGCA 347
BSNT_02694___ 343 G-CGGATTTAGAGCATGACATGAAGATCACCGGTTATGAACAGG--GGAA 389
| ..||||||||.||.|.|||||..|||.|.||.|||||| | ||||
BPUM_1555___y 348 GATTGATTTAGATCACGCCATGAGAATCTCAGGATATGAA---GCTGGAA 394
BSNT_02694___ 390 AGAGGACGAACTTTCCAGCT--TTAC--TGTCAGCGAAACATCCTTTTTT 435
|.||.||..|||..| || |||| ||||||..|||||...||||.|
BPUM_1555___y 395 --ATGAAGATATTTTGA-CTGGTTACAATGTCAGTCAAACAAGTTTTTAT 441
BSNT_02694___ 436 ATTGTAGACGGAGAAGAAGTGCAGATTGCGCCGTATAATCGCCAATTTGG 485
||||.|||.||.||||||.|.||.||.||.||.||.|||||.||||||||
BPUM_1555___y 442 ATTGCAGATGGTGAAGAAATTCAAATCGCACCATACAATCGTCAATTTGG 491
BSNT_02694___ 486 TTCCAAACCTGTGTGGCAGCGGATTAAAGCAATTGCTGCAGGGCCGATTA 535
.||.|||.|.||.||||||||.||||||||.||.||.||.||.|||||||
BPUM_1555___y 492 ATCAAAAACGGTATGGCAGCGTATTAAAGCGATCGCAGCTGGACCGATTA 541
BSNT_02694___ 536 TGAACTTTATTTTAGCTTACGTCATTTTAGTGATGCTT--GGGCTGATTC 583
||||||||||.||.||.||.||.|||||||| ||||| ||..|.||||
BPUM_1555___y 542 TGAACTTTATCTTGGCGTATGTGATTTTAGT--TGCTTTAGGATTTATTC 589
BSNT_02694___ 584 AAGGCGT-ACCGTCAAATGAACCTATGCTCGGGCAGCTGAC---AGACAA 629
||||.|| ||||| ..||||.|||.|.|||||..||||||| ||||
BPUM_1555___y 590 AAGGGGTCACCGT-TGATGATCCTGTACTCGGTAAGCTGACGAAAGAC-- 636
BSNT_02694___ 630 TGGACGGGCAGCTGAAGCAGGGCTAAAAGAAGGG-GATTATATCCAAAG- 677
||.||.||.||.|||||.||.|| .|.|.|||| ||..|.||| |
BPUM_1555___y 637 -GGCCGAGCGGCAGAAGCTGGACT-CATGCAGGGAGACCACATC----GT 680
BSNT_02694___ 678 ---CATTAACGGAGAGAAAATGAGGTCTTGGACTGACATTGTC------T 718
|||||||||.||.||||||...||||||||.|| |||| .
BPUM_1555___y 681 GTCCATTAACGGGGATAAAATGGATTCTTGGACAGA---TGTCGTTCAAA 727
BSNT_02694___ 719 CCGCTGTAAAAGAAAACCCGGAGAAAGAAATGGACGTTG-CAGTAAAAAG 767
||| |..||||| |||||.||||||.|||||.|.||.| || |..|..|
BPUM_1555___y 728 CCG-TTCAAAAG--AACCCTGAGAAAAAAATGAATGTCGTCA-TTGACCG 773
BSNT_02694___ 768 AGA----TAACAAAACGCTTCATATTTCGGTGACTCCGGAAGCTGTTAAA 813
||| .||.|||.|.||..|.| |||....||.||||||||.|||
BPUM_1555___y 774 AGACGGCAAAGAAAGCACTGTACA----GGTTGTACCAGAAGCTGTGAAA 819
BSNT_02694___ 814 GATGAGAACAAAAAAACAATCGGACGTTTCGGTTCCTATGCGCCGACTGA 863
| .|||....|||||| ||.||.||||||||.||.|||.||||.||.||
BPUM_1555___y 820 G--CAGACGGGAAAAAC-ATTGGCCGTTTCGGATCTTATCCGCCAACGGA 866
BSNT_02694___ 864 AAAAGGCGTACTCTCAGCGGTTGCTTACGGCGCGACAT---------CAA 904
|||.||..| |||.| .||||..|| ||| |||
BPUM_1555___y 867 AAATGGATT--TCTGA-AGGTTATTT---------CATCCTCAGGAACAA 904
BSNT_02694___ 905 CAGTTGATGTCACCAAAGC------CATTTTAACCAATCTGAGCAA---A 945
|.| ||||.||| |.||| .||||||||.||..| |||| |
BPUM_1555___y 905 CTG-TGATTTCA--ACAGCAGGTTTGATTTTAACGAACTT--GCAAAAGA 949
BSNT_02694___ 946 TTAGTAACAGGCCAATTTAAACTCGATATGCTGTCAGGTCCTGTCGGCAT 995
|| ||.|||||.||||||..|.|.||||||.|..||||||||||.||.||
BPUM_1555___y 950 TT-GTCACAGGGCAATTTTCATTAGATATGTTAGCAGGTCCTGTTGGGAT 998
BSNT_02694___ 996 ATATGACATGACAGACCAAGTGGCGAAAACAGGGATCGTGAA-TTTATTT 1044
.|||||||||||||...||||.|| .||.||.||...||.|| .|||.|.
BPUM_1555___y 999 CTATGACATGACAGGAGAAGTAGC-TAAGCAAGGTGTGTTAACATTAATG 1047
BSNT_02694___ 1045 CAGTTTGCGGCGTTTTTAAGCATTAATCTT-GGGATTGTCAACCTGCTTC 1093
||||||||||||||..|.||.||.|| ||| ||.||.||.||..|..|.|
BPUM_1555___y 1048 CAGTTTGCGGCGTTCCTTAGTATCAA-CTTAGGTATCGTGAATTTATTGC 1096
BSNT_02694___ 1094 CGATTCCGGCACTTGACGGAGGAAG---ACTGTTGTTTCTATTTATTGAA 1140
|||||||.|||||.|||||||||.| |||.||.| |.|||.|||||
BPUM_1555___y 1097 CGATTCCTGCACTAGACGGAGGACGTTTACTCTTCT---TGTTTGTTGAA 1143
BSNT_02694___ 1141 GCGATTCGGGGCAAACCGATTAACAGGGAAAAAGAAGCATTTGTTGTGTT 1190
||.|||||.||.|||||.|||||..|.||.|||||||||.|||||||.||
BPUM_1555___y 1144 GCCATTCGCGGTAAACCAATTAATCGTGAGAAAGAAGCACTTGTTGTCTT 1193
BSNT_02694___ 1191 TATCGGAGTAGCTTTCTTAATGCTTCTTATGCTGGTTGTCACATGGAACG 1240
||||||.||.||.|||.|.|||||..|.|||||.||.||.||.|||||.|
BPUM_1555___y 1194 TATCGGTGTTGCATTCCTCATGCTGTTAATGCTAGTGGTTACGTGGAATG 1243
BSNT_02694___ 1241 ATATCCAGCGGCTGTTTTTGTAA 1263
|.||||||||..|.|||||.|||
BPUM_1555___y 1244 ACATCCAGCGATTATTTTTATAA 1266
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