Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02696 and BPUM_1556
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:18
# Commandline: needle
# -asequence dna-align/BSNT_02696___proS.1.24716.seq
# -bsequence dna-align/BPUM_1556___proS1.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02696___proS-BPUM_1556___proS1.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02696___proS-BPUM_1556___proS1.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02696___proS
# 2: BPUM_1556___proS1
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1755
# Identity: 1221/1755 (69.6%)
# Similarity: 1221/1755 (69.6%)
# Gaps: 117/1755 ( 6.7%)
# Score: 4017.5
#
#
#=======================================
BSNT_02696___ 1 ATGAGACAAAGCTTGACGCTTATTCCTACGCTCCGTGAAGTTCCAGCTGA 50
|||||||||..|.||||..|.||.||.||.||.||.||.||.|||||.||
BPUM_1556___p 1 ATGAGACAATCCCTGACTTTCATACCAACTCTTCGAGAGGTGCCAGCAGA 50
BSNT_02696___ 51 TGCCGAAGCAAAAAGTCATCAGCTTCTT-CTGAGAGCAGGATTTATCAGA 99
|||.||.|||||||||||.|||| |||| .|.|||||.||.||.||.|||
BPUM_1556___p 51 TGCTGAGGCAAAAAGTCACCAGC-TCTTAGTAAGAGCTGGGTTCATAAGA 99
BSNT_02696___ 100 CAGAATACGAGCGGGGTATA-CAGCTATATGCCTCTTGCGTATAAGGTGA 148
||.|||||.|||||..|.|| || .|||.||||.|||||..||||.||.|
BPUM_1556___p 100 CAAAATACAAGCGGAATCTATCA-TTATCTGCCGCTTGCTCATAAAGTCA 148
BSNT_02696___ 149 TTCAAAACATTCAGCAGATTGTTCGAGAGGAAATGGAGAAAATTGATGCC 198
||||..|.|||||....||.|||||..||||.|||||.||....|..||.
BPUM_1556___p 149 TTCAGCATATTCAATCCATCGTTCGCAAGGAGATGGAAAAGGCAGGAGCA 198
BSNT_02696___ 199 GTAGAAATGCTCATGCCCGCATTGCAGCAGGCAGAGACATGGCAGGAATC 248
|..||..||.|.|||||.|...||||.||||||||.|..|||||.||.||
BPUM_1556___p 199 GCTGAGCTGTTAATGCCAGTGCTGCAACAGGCAGAAATGTGGCAAGAGTC 248
BSNT_02696___ 249 AGGCAGATGGTATACGTATGGTCCCGAACTGATGAGACTAAAAGACCGTC 298
|||.|||||||||||.||.|||||.|||.|||||.|..|.|||||.||||
BPUM_1556___p 249 AGGAAGATGGTATACATACGGTCCAGAATTGATGCGTATGAAAGATCGTC 298
BSNT_02696___ 299 ATGGCCGTGAATTTGCTTTAGGGGCAACGCATGAAGAGGTTATCACTTCG 348
|||||||.||.||.||..|.||..|||||||.|||||.||.||.||.||.
BPUM_1556___p 299 ATGGCCGCGAGTTCGCACTTGGCCCAACGCACGAAGAAGTGATTACATCA 348
BSNT_02696___ 349 CTTGTTCGCGATGAGGTTAAATCTTATAAGCGTCTCCCTCTGACTCTTTA 398
||.||.||....||.||.|||||.||||||...||.|||.|.||||||||
BPUM_1556___p 349 CTCGTACGTAGCGAAGTGAAATCGTATAAGAAGCTTCCTTTAACTCTTTA 398
BSNT_02696___ 399 TCAAATTCAGTCTAAGTTCAGAGATGAAAAACGTCCTCGCTTCGGTTTGT 448
|||||||||.||.||.|||.|.||.|||.|..|.||.||.||.||..||.
BPUM_1556___p 399 TCAAATTCAATCAAAATTCCGTGACGAACAGAGACCGCGTTTTGGGCTGC 448
BSNT_02696___ 449 TAAGAGGCCGCGAATTTATTATGAAGGATGCGTACTCTTTCCATGCATCT 498
|..|.||.||.||||||||||||||||||||||||||.||||||.|.||.
BPUM_1556___p 449 TGCGTGGACGTGAATTTATTATGAAGGATGCGTACTCATTCCATTCTTCA 498
BSNT_02696___ 499 GCAGAGAGCCTGGATGAAACGTATCAA-AAAATG--TACGAGGCCTATTC 545
.||||.|||||.|||||.||.|| ||| ||.||| ||| .||.||.||
BPUM_1556___p 499 CCAGAAAGCCTTGATGACACATA-CAACAAGATGTTTAC--AGCTTACTC 545
BSNT_02696___ 546 TAATATTTTTGCCCGCTGC-------GGCATTAATGTAAGACCTGTTATC 588
.|||.|.|| || | ||..|||||.|.|||||.||.||.
BPUM_1556___p 546 CAATGTATT------CT-CAAAAGTAGGTCTTAATTTTAGACCAGTCATT 588
BSNT_02696___ 589 GCTGATTCAGGCGCAATGGGAGGAAAGGATACGCACGAATTTATGGCACT 638
||.|||||.||.||||||||||||||.|||||.||.||.|||||||||||
BPUM_1556___p 589 GCAGATTCTGGTGCAATGGGAGGAAAAGATACACATGAGTTTATGGCACT 638
BSNT_02696___ 639 TTCTGCGATCGGAGAGGATACGATTGCGTATTCTGATGAATCACAGTACG 688
.||.|...|.|||||.|||||.||.||.||.||||||..|||....||.|
BPUM_1556___p 639 GTCAGAAGTAGGAGAAGATACAATCGCATACTCTGATACATCTTCCTATG 688
BSNT_02696___ 689 CGGCTAATATCGAGATGGCTGAAGTTCT---TCACCAGGA--------AG 727
|.||.||.||.||.||||||||||.|.| ||| |||| |.
BPUM_1556___p 689 CTGCGAACATTGAAATGGCTGAAGCTGTCTATCA--AGGAGAAGAAGCAA 736
BSNT_02696___ 728 TTCCTTCAGATGAAGAGCCT--AAAGCTCTAGAGAAGGTTCATACGCCTA 775
.||||.|||| || ||||..||.||.||.||||||||.|||.
BPUM_1556___p 737 ATCCTGCAGA--------CTTCAAAGAACTTGAAAAAGTTCATACACCTC 778
BSNT_02696___ 776 ACGTGAAAACAATCGAAGAACTGACTGCGTTCTTACAGGTTTCGGCTGAA 825
|.||.|||||.||..||||..|..|||..||.|||.|.|| |||.
BPUM_1556___p 779 AAGTAAAAACGATTCAAGACATCGCTGGATTTTTAGATGT------TGAT 822
BSNT_02696___ 826 GC------GTGCATTAAGTCAGTATTGTTTAAAGCTGATGA-CCGTTTTG 868
.| .||.||.|||||.||.|||||||||||.||||| .|||.|..
BPUM_1556___p 823 CCTTCTCTTTGTATCAAGTCTGTTTTGTTTAAAGCAGATGATGCGTATGT 872
BSNT_02696___ 869 TCTTAGTGCTTGTAAGAGGGGATCATGAAGTTAACGATATTAAAGTGAAA 918
|||.| |.||....|||||.||.||||||||.||.|||.|.|||||||||
BPUM_1556___p 873 TCTCA-TCCTGACGAGAGGCGACCATGAAGTAAATGATGTGAAAGTGAAA 921
BSNT_02696___ 919 AACTTGCTTCATGCAGAAGTTGTAGAGCTTGCTACACATGA--------- 959
|||||..|....|||.|..||||||||||.|||||.|..||
BPUM_1556___p 922 AACTTAGTAGGAGCACAGCTTGTAGAGCTGGCTACTCGCGAAGAAGTACT 971
BSNT_02696___ 960 AGAGGTCATTCAGCAGCTCGGAACAGAGCCAGGCTTTGTAGGCCCTGT-- 1007
|||.|||||| |||||||||||.||.|||||.|||||.||
BPUM_1556___p 972 AGAAGTCATT---------GGAACAGAGCCTGGATTTGTTGGCCCAGTAA 1012
BSNT_02696___ 1008 --CGGTATTCATCAGGATGTGGAAGTATATGCCGATCAAGCTGTGAAAGC 1055
|.|.|..|| ||.||.||..|.|||||.||.|...|.||.||||.
BPUM_1556___p 1013 AGCTGGAAGCA----GAAGTCGATATTTATGCAGACCTTACAGTTAAAGG 1058
BSNT_02696___ 1056 AATGGTTAATGCTGTTGCCGGGGCAAATGAAGGAGATCATCATTATAAAA 1105
.|||...||||||||.||.||.|||||.||||..|||.||||.|
BPUM_1556___p 1059 CATGACAAATGCTGTCGCAGGTGCAAACGAAGCGGATTATCACT------ 1102
BSNT_02696___ 1106 ATGTCAATGTGAAT------CGTGACGCGCAAATTAAAGAATTTGCTGAT 1149
||||||||||.||| |||||.|.|..|.|.||||||||..|.||.
BPUM_1556___p 1103 ATGTCAATGTTAATCCTGCGCGTGATGTGTCAGTGAAAGAATTCACAGAC 1152
BSNT_02696___ 1150 CTTCGTTTTATTAAAGAAGGTGATCCTTCACCAGACGGCAAGGGAACGAT 1199
||||||||.|||.|||||||.||...|||.|||||.||..|.||.||.||
BPUM_1556___p 1153 CTTCGTTTCATTCAAGAAGGAGACGTTTCTCCAGATGGAGAAGGCACAAT 1202
BSNT_02696___ 1200 CCGTTTTGCTGAGGGAATCGAAGTCGGACAAGTCTTTAAGCTCGGAACAC 1249
||..|||||..||||.||.|||||.||||||||||||||.||.||.||.|
BPUM_1556___p 1203 CCAGTTTGCCAAGGGGATTGAAGTAGGACAAGTCTTTAAACTAGGCACTC 1252
BSNT_02696___ 1250 GCTATTCAGAAGCGATGAATGCGACATATTTAGATGAAAACGGACGCGCG 1299
|.|||||.||..|.|||.|||||||.||..|.|||||.||.||.||.|||
BPUM_1556___p 1253 GTTATTCTGAGTCAATGGATGCGACGTACCTGGATGAGAATGGCCGGGCG 1302
BSNT_02696___ 1300 CAGCCAATGCTGATGGGCTGTTACGGAATCGGTGTGTCAAGAACGCTTTC 1349
|||||||||.|.|||||.||.||.||.||||||.|.||.|||||||||||
BPUM_1556___p 1303 CAGCCAATGATTATGGGTTGCTATGGTATCGGTATCTCTAGAACGCTTTC 1352
BSNT_02696___ 1350 TGCTATTGCTGAACAGCATCACGACGAAAAAGGCTTAATATGGCCAAAAA 1399
.||.||||..||.|||||||||||.||.|||||..|.||.||||| |.||
BPUM_1556___p 1353 AGCGATTGTAGAGCAGCATCACGATGAGAAAGGAATCATTTGGCC-AGAA 1401
BSNT_02696___ 1400 GC-GTTGCGCCGTACGATCTTCATATTCTTGCTTTGAACATGAAAAACGA 1448
|| ||||||||.||.||.|||||..|.|||||.||.||.|||||||||||
BPUM_1556___p 1402 GCTGTTGCGCCATATGACCTTCACCTCCTTGCATTAAATATGAAAAACGA 1451
BSNT_02696___ 1449 TGGGCAAAGAGAGCTTGCTGAAAAGCTGTATGCCGA---TTTAAAAGCGG 1495
||..||||.||||||||||||||.|.|||| ||| ||||.||...|
BPUM_1556___p 1452 TGCTCAAAAAGAGCTTGCTGAAACGTTGTA---CGAGCGTTTAGAAAATG 1498
BSNT_02696___ 1496 AAGGCTATGAAGTGCTCTATGATGACCGTGCTGAGCGTGCCGGCGTAAAA 1545
|.||.|.|||.||.||.|..||||||||....||||||||.|||||.|||
BPUM_1556___p 1499 AGGGTTTTGACGTACTATTCGATGACCGACAGGAGCGTGCAGGCGTGAAA 1548
BSNT_02696___ 1546 TTCGCTGATTCA--GATTTAATCGGCCTTCCAATCCGCATCA-CTGTCGG 1592
||.||.|| || ||||||||.||.||.|||||.|||||.| ||| |||
BPUM_1556___p 1549 TTTGCAGA--CAGTGATTTAATTGGGCTGCCAATTCGCATTAGCTG-CGG 1595
BSNT_02696___ 1593 AAAACGAGCTGACGAAGGAATCGTCGAAGTGAAAATTCGTCAAACTGGTG 1642
||||||..|.||.|||||.|||||.||||||||..||.|..||.|.||||
BPUM_1556___p 1596 AAAACGTTCAGAAGAAGGCATCGTTGAAGTGAAGTTTAGAAAATCAGGTG 1645
BSNT_02696___ 1643 AGTCAACTGAGATTTCAGTAGACGA-ATTATCTGCGTTTAT-CAGCAAGC 1690
|.|||..|||..|.||.||.||.|| .|.|| |.|.||||| |..|||||
BPUM_1556___p 1646 AATCACATGAAGTATCTGTTGATGAGCTGAT-TTCATTTATACGCCAAGC 1694
BSNT_02696___ 1691 AGTAA 1695
||||
BPUM_1556___p 1695 -GTAA 1698
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