Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_02704 and BPUM_1566

See Amino acid alignment / Visit BSNT_02704 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:20
# Commandline: needle
#    -asequence dna-align/BSNT_02704___infB.1.24716.seq
#    -bsequence dna-align/BPUM_1566___infB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02704___infB-BPUM_1566___infB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02704___infB-BPUM_1566___infB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02704___infB
# 2: BPUM_1566___infB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2187
# Identity:    1696/2187 (77.5%)
# Similarity:  1696/2187 (77.5%)
# Gaps:         102/2187 ( 4.7%)
# Score: 6683.0
# 
#
#=======================================

BSNT_02704___      1 ATGGCTAAAATGAGAGTATACGAATATGCAAAAGCGTTAAATGTTTCAAG     50
                     |||||||||.||||||||||.|||||.||||||||..||.||||||||||
BPUM_1566___i      1 ATGGCTAAAGTGAGAGTATATGAATACGCAAAAGCCATAGATGTTTCAAG     50

BSNT_02704___     51 TAAGGAAATTTTGACCGCACTGAAGAACATGGATTTAGAAGTGAATAATC    100
                     |||.||.|||.|..|.||.||.|||.|.|||.|..|.||||||||.||.|
BPUM_1566___i     51 TAAAGATATTATAGCAGCGCTTAAGGATATGAACGTGGAAGTGAACAACC    100

BSNT_02704___    101 ACATGGCCATGCTTGAAGAAAAGGCCATTAAAAAGCTAGATGCCAAATAT    150
                     |||||||.|.|||||||||..|..|..|.|||||||||||.||.|..|||
BPUM_1566___i    101 ACATGGCGACGCTTGAAGACGACACTGTGAAAAAGCTAGACGCTATCTAT    150

BSNT_02704___    151 AAAAAAGGCGGCGCAGCTGCTAAATCTCAAAAGCCAGC-----AGAAAC-    194
                     ||||||            ||.|||.|..||.||.||||     |||||| 
BPUM_1566___i    151 AAAAAA------------GCCAAAGCAAAAGAGACAGCTAACGAGAAACC    188

BSNT_02704___    195 ----GAACAAAAACAAACAGCCACAAGGGGTTAATCAGCAATCAGCTGGA    240
                         |||||||||.||                      ||||||.||   
BPUM_1566___i    189 CGCAGAACAAAAAAAA----------------------CAATCATCT---    213

BSNT_02704___    241 AATCAACCAAATAAAATTCGAGACGGAAAGAAGAATGACGTGCAGAATAA    290
                         |||.||||.||     .||..|||||||||||||||||||||||||
BPUM_1566___i    214 ----AACAAAATCAA-----TGATAGAAAGAAGAATGACGTGCAGAATAA    254

BSNT_02704___    291 TCAATTTAACAAAAACAAGAAGAATAACAAC---AACAAA---AAAAATA    334
                     |||||||||.||||||||.||.||.||||||   ||||||   |||||||
BPUM_1566___i    255 TCAATTTAATAAAAACAAAAAAAACAACAACCAAAACAAAAACAAAAATA    304

BSNT_02704___    335 AACGC------AACAACAACAATAATAAAAAC-CAACATCAGCAA---AA    374
                     |||||      ||.|||          |||.| ||.|||||.|||   |.
BPUM_1566___i    305 AACGCGGTGGGAATAAC----------AAATCGCAGCATCAACAAGCTAG    344

BSNT_02704___    375 GCCTGTAAAGCCGAAAAAAGAGCTTCCTGAGAAAATTACATTCTCTGGCA    424
                     .||||||||.||.|||||||||||||||||.||||||..|||..||   |
BPUM_1566___i    345 ACCTGTAAAACCTAAAAAAGAGCTTCCTGAAAAAATTGAATTTACT---A    391

BSNT_02704___    425 CTT---TAACAGTTGGCGCA-CTTGCTGAAGAGCTTGGCAAAGAGCCTTC    470
                     .||   |.|||||.|| .|| ||.||||||||||||||.|||||..|..|
BPUM_1566___i    392 ATTCAATGACAGTCGG-ACAGCTGGCTGAAGAGCTTGGAAAAGAAACAGC    440

BSNT_02704___    471 AGAAATCATTAAAAAGCTGATGCTTCTTGGCGTAATGGCAACTATTAACC    520
                     .|||||.||.||||||||||||.|.|||||.||.||||||||.|||||||
BPUM_1566___i    441 TGAAATTATCAAAAAGCTGATGATGCTTGGTGTTATGGCAACCATTAACC    490

BSNT_02704___    521 AAGAGCTTGATAAAGACACAATCGAACTCATTGCATCAGAATATGGTGTT    570
                     |||||||.||||||||.|||.|.|||.|.||.||.||.||||||||.|||
BPUM_1566___i    491 AAGAGCTGGATAAAGATACAGTTGAATTAATCGCTTCTGAATATGGCGTT    540

BSNT_02704___    571 GAAACAGAAGAGGTCATTGTGCTTGAAGAAACAGAGCTGGAAAAATACGA    620
                     ..|..|||.||.||||||.|..|.||||||||.||.||.|||||.||.||
BPUM_1566___i    541 CCAGTAGAGGAAGTCATTATTTTAGAAGAAACTGAACTTGAAAAGTATGA    590

BSNT_02704___    621 AGAGCCT----GATAATGAAGAGGATCTTGAAATTCGTCCTCCTGTCGTG    666
                     ||    |    |||||.|||||.|||.|..||.|.||.|||||.||.|||
BPUM_1566___i    591 AG----TTGAAGATAAAGAAGAAGATATGCAAGTACGCCCTCCAGTTGTG    636

BSNT_02704___    667 ACAATCATGGGCCACGTTGACCATGGGAAAACAACGCTTCTTGACAGCAT    716
                     ||.||||||||.|||||||||||.||||||||||||||||||||||||||
BPUM_1566___i    637 ACGATCATGGGACACGTTGACCACGGGAAAACAACGCTTCTTGACAGCAT    686

BSNT_02704___    717 CCGTAAAACAAAGGTTGTTGAAGGAGAAGCAGGCGGAATCACTCAGCATA    766
                     .|||||.||.||.|||||||||||.||||||||.||||||||.|||||||
BPUM_1566___i    687 TCGTAAGACGAAAGTTGTTGAAGGTGAAGCAGGTGGAATCACGCAGCATA    736

BSNT_02704___    767 TCGGCGCTTATCAAATTGAAGAGAACGGCAAGAAAATCACGTTTTTGGAT    816
                     ||||.||.||.|||||||||||.||.|||||||||||||||||..|.|||
BPUM_1566___i    737 TCGGTGCATACCAAATTGAAGAAAATGGCAAGAAAATCACGTTCCTTGAT    786

BSNT_02704___    817 ACACCGGGCCACGCCGCATTTACAACAATGCGTGCACGCGGTGCAGAAGT    866
                     |||||.||.|||||.||.||||||||.|||||||||||.|||||.||.||
BPUM_1566___i    787 ACACCTGGACACGCAGCTTTTACAACGATGCGTGCACGTGGTGCCGAGGT    836

BSNT_02704___    867 AACTGATATTACGATTCTTGTCGTAGCTGCCGATGACGGTGTCATGCCGC    916
                     |||.||||..||.|||||.||.||.||.||.|||||.||.||.|||||||
BPUM_1566___i    837 AACGGATACAACCATTCTAGTTGTTGCAGCAGATGATGGCGTTATGCCGC    886

BSNT_02704___    917 AAACAGTTGAAGCGATTAACCATGCAAAAGCAGCAGAGGTTCCAATCATC    966
                     ||||.||||||||.|||||||||||.|||||||||||.||.||||||||.
BPUM_1566___i    887 AAACGGTTGAAGCCATTAACCATGCGAAAGCAGCAGAAGTACCAATCATT    936

BSNT_02704___    967 GTTGCTGTGAATAAAATAGATAAAGAATCCGCAAACCCTGACCGTGTGAT   1016
                     ||||||||.||||||||.||.|||..|.|.||.|||||||||||||||||
BPUM_1566___i    937 GTTGCTGTCAATAAAATTGACAAACCAACAGCGAACCCTGACCGTGTGAT    986

BSNT_02704___   1017 GCAAGAACTGACGGAATACGGACTTGTCCCTGAAGCTTGGGGCGGAGAAA   1066
                     |||.|||.|.||.||..|.||.||.||.|||||||||||||||||.||||
BPUM_1566___i    987 GCAGGAATTAACCGAGCATGGTCTAGTACCTGAAGCTTGGGGCGGCGAAA   1036

BSNT_02704___   1067 CCATTTTTGTGCCGCTTTCCGCTTTAACTGGAAAAGGCATTGATGAGCTC   1116
                     |.||.||.||.||.||.||.||...|||.||..||||||||||.||..|.
BPUM_1566___i   1037 CGATCTTCGTTCCTCTATCTGCAAAAACAGGTGAAGGCATTGACGAATTG   1086

BSNT_02704___   1117 GTTGAAATGATTTTGCTTGTCAGTGAGGTAGAGGAACTGAAAGCGAATCC   1166
                     .|.||||||||..|.|||||||||||.||.|..|||||||||||.||.||
BPUM_1566___i   1087 ATCGAAATGATCCTTCTTGTCAGTGAAGTTGGAGAACTGAAAGCCAACCC   1136

BSNT_02704___   1167 GAACCGTCAGGCAAAAGGAACGGTTATTGAAGCTGAACTCGATAAAGGCA   1216
                     .||.|||..||||||||||||.|||||.||.|||||.||.||||||||.|
BPUM_1566___i   1137 AAATCGTGCGGCAAAAGGAACTGTTATCGAGGCTGAGCTTGATAAAGGAA   1186

BSNT_02704___   1217 GAGGGTCAGTCGCGACATTGCTCGTACAGACTGGAACACTGCATGTCGGT   1266
                     ||||.||.||.||.||..|.||.||.||.|||||.|||||.|||||.|||
BPUM_1566___i   1187 GAGGATCTGTTGCAACCCTTCTTGTTCAAACTGGTACACTTCATGTAGGT   1236

BSNT_02704___   1267 GATCCGATCGTAGTCGGCAATACATTTGGCCGTGTCCGTGCAATGGTTAA   1316
                     ||.||.|||||.|||||.|||||||||||||||||.|||||||||||.||
BPUM_1566___i   1237 GACCCAATCGTTGTCGGAAATACATTTGGCCGTGTACGTGCAATGGTCAA   1286

BSNT_02704___   1317 CGACATTGGCCGCCGTGTGAAAACTGCCGGCCCGTCAACTCCGGTTGAAA   1366
                     .|||||.||.|||||.||||||||.||.||.||.||.||.||.|||||||
BPUM_1566___i   1287 TGACATCGGACGCCGCGTGAAAACAGCAGGACCATCTACACCTGTTGAAA   1336

BSNT_02704___   1367 TTACCGGTTTGAATGATGTCCCTCAAGCGGGAGACCAATTCCTTGTCTTT   1416
                     |.||.|||||.||.|||||.||..|.||.||.||.||||||||.||.||.
BPUM_1566___i   1337 TCACTGGTTTAAACGATGTACCGAATGCAGGGGATCAATTCCTCGTATTC   1386

BSNT_02704___   1417 AAGGATGAAAAAACAGCTCGTTCTGTCGGTGAAGCCCGTGCTTCGAAACA   1466
                     ||.||||||||||||||||||...||.|||||.||.||||||||.|||||
BPUM_1566___i   1387 AAAGATGAAAAAACAGCTCGTCAAGTAGGTGAGGCGCGTGCTTCAAAACA   1436

BSNT_02704___   1467 GCTTGAAGAGCAGCG--CAGCGATAAAGCGAAGCTCAGTCTTGATGATTT   1514
                     ||||||.||.|||||  ||  ||.||||||||.||...|||.|||||..|
BPUM_1566___i   1437 GCTTGATGAACAGCGTTCA--GACAAAGCGAAACTATCTCTAGATGACCT   1484

BSNT_02704___   1515 ATTCGAGCAAATTAAGCAAGGTGATGTAAAAGACATCAACCTCATCGTAA   1564
                     |||.||||||||.||.||||||||.||.|||||.||||||.|.|||||.|
BPUM_1566___i   1485 ATTTGAGCAAATCAAACAAGGTGAAGTGAAAGATATCAACTTGATCGTGA   1534

BSNT_02704___   1565 AAGCTGACGTTCAAGGATCTGCTGAAGCTTTAACGGCTGCACTTCAAAAA   1614
                     ||||.||.||.|||||.|||||||||||..|.||||||||.|||||||||
BPUM_1566___i   1535 AAGCAGATGTACAAGGTTCTGCTGAAGCACTGACGGCTGCTCTTCAAAAA   1584

BSNT_02704___   1615 ATTGAAGTAGAAGGCGTTAAAGTGAAAATCATCCATACAGGCGTTGGTGC   1664
                     |||||||||||||||||.||||||||||||||||||||.||.|||||.||
BPUM_1566___i   1585 ATTGAAGTAGAAGGCGTAAAAGTGAAAATCATCCATACGGGTGTTGGAGC   1634

BSNT_02704___   1665 GATTACTGAATCAGACATTATCTTGGCATCTGCTTCCAATGCAATTGTTA   1714
                     ||||||.|||||.||.|||||.||.|||..||||||.|||||.||.||.|
BPUM_1566___i   1635 GATTACAGAATCTGATATTATTTTAGCAAGTGCTTCTAATGCGATCGTGA   1684

BSNT_02704___   1715 TCGGGTTTAATGTGAGACCGGACGGAAATGCTAAGAGTACGGCTGAAGCT   1764
                     ||||.|||||.||..|.||.||.||||||||.|||||.||.||||||.|.
BPUM_1566___i   1685 TCGGATTTAACGTACGTCCTGATGGAAATGCGAAGAGCACAGCTGAAACA   1734

BSNT_02704___   1765 GAAAATGTAGATATTCGACTTCACCGTATCATTTACAAAGTAATCGACGA   1814
                     |||||.||||||||.||..|.|||||.||.|||||.|||||.|||||.||
BPUM_1566___i   1735 GAAAACGTAGATATCCGTTTACACCGCATTATTTATAAAGTCATCGATGA   1784

BSNT_02704___   1815 GATTGAAGCTGCCATGAAAGGTATGCTTGATCCTGAATATGAAGAAAAAG   1864
                     .||||||||.||.||||||||.||||||||.|||||||||||||||||||
BPUM_1566___i   1785 AATTGAAGCAGCGATGAAAGGAATGCTTGACCCTGAATATGAAGAAAAAG   1834

BSNT_02704___   1865 TAATTGGTCAAGTAGAAGTACGCCAAACATTCAAAGTATCTAAAATCGGT   1914
                     |.||.||||||||.|||||.||.|||||.|||||||||||||||||.|||
BPUM_1566___i   1835 TCATCGGTCAAGTTGAAGTTCGTCAAACGTTCAAAGTATCTAAAATTGGT   1884

BSNT_02704___   1915 ACAATTGCCGGCGGATATGTTACTGAAGGAACCATTACGCGCGACAGCGG   1964
                     ||||||||.||.||.|||||.||||||||||||||.||..|.||.||.||
BPUM_1566___i   1885 ACAATTGCTGGTGGTTATGTCACTGAAGGAACCATCACAAGAGATAGTGG   1934

BSNT_02704___   1965 CCTCCGTTTAATTCGTGACGGCGTCGTCATCTTTGAAGGCGAAGTAGATG   2014
                     ..||||.|||||.||||||||||||||.||.||||||||||||||.||.|
BPUM_1566___i   1935 TATCCGCTTAATCCGTGACGGCGTCGTTATTTTTGAAGGCGAAGTCGACG   1984

BSNT_02704___   2015 TTCTGAAACGCTTTAAAGACGATGTGAAAGAAGTTTCACAAGGCTATGAA   2064
                     |..|.|||||.||.|||||.||.|||||||||||||||||.|||||||||
BPUM_1566___i   1985 TATTAAAACGATTCAAAGATGACGTGAAAGAAGTTTCACAGGGCTATGAA   2034

BSNT_02704___   2065 TGTGGTATTACAATTAAGAAATACAATGACATTCGTGAAGGTGACATCCT   2114
                     |||||||||||.||||||||.|||||.||.||.|||||||||||..||.|
BPUM_1566___i   2035 TGTGGTATTACCATTAAGAAGTACAACGATATCCGTGAAGGTGATGTCAT   2084

BSNT_02704___   2115 TGAAGCGTTTGTCATGCAAGAAATTGAAAGAACGTGA   2151
                     .|||.|.||.||.|||||||||||.|||||||..|||
BPUM_1566___i   2085 GGAATCATTCGTTATGCAAGAAATCGAAAGAAAATGA   2121


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.