Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02706 and BPUM_1568

See Amino acid alignment / Visit BSNT_02706 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:20
# Commandline: needle
#    -asequence dna-align/BSNT_02706___rbfA.1.24716.seq
#    -bsequence dna-align/BPUM_1568___rbfA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02706___rbfA-BPUM_1568___rbfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02706___rbfA-BPUM_1568___rbfA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02706___rbfA
# 2: BPUM_1568___rbfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 357
# Identity:     264/357 (73.9%)
# Similarity:   264/357 (73.9%)
# Gaps:          15/357 ( 4.2%)
# Score: 965.5
# 
#
#=======================================

BSNT_02706___      1 ------ATGAGAGCAAACCGTGTCGGCGAGCAAATGAAAAAAGAACTCGG     44
                           ||||||||||.|||.||.||.|||||.||||||||||||.|.||
BPUM_1568___r      1 ATGAGTATGAGAGCAACCCGCGTGGGTGAGCAGATGAAAAAAGAATTAGG     50

BSNT_02706___     45 TGATATTATCAGCCGCAAGCTGAAAGACCCGAGAATTGGTTTTCTGACAG     94
                     .||.||..|..||.|.|||||.|||||.||||||||.||.|||.||||.|
BPUM_1568___r     51 CGACATCCTAGGCAGAAAGCTAAAAGATCCGAGAATCGGCTTTTTGACTG    100

BSNT_02706___     95 TAACGGATGT--ACGTGTATCAGGTGATTTGCAAATTGCAAAGGTGTATA    142
                     ||||.|||||  |.|||  ||.|||||||||||||||||.||.|||||.|
BPUM_1568___r    101 TAACCGATGTCGAAGTG--TCCGGTGATTTGCAAATTGCGAAAGTGTACA    148

BSNT_02706___    143 TCTCGGTTCTCGGTGACGAGAAAAAACGGGAAGAAGCGCTGAAAGGGCTG    192
                     |.||.|||||||||||||||||.|||.|.||.|||.|..|.|||||.||.
BPUM_1568___r    149 TTTCTGTTCTCGGTGACGAGAAGAAAAGAGAGGAAACCTTAAAAGGCCTT    198

BSNT_02706___    193 GCAAAAGCGAAAGGATTTATCCGATCCGAAATCGGCAGCCGCATCAGACT    242
                     |||||.||.|||||.|.||||||.||.|||||.||||..||.||.|||||
BPUM_1568___r    199 GCAAAGGCTAAAGGGTATATCCGTTCTGAAATTGGCAATCGAATTAGACT    248

BSNT_02706___    243 TCGAAAAACGCCTGAAATTGAATTTGAGTTCGATGAATCAATCGATTACG    292
                     |||.|||||.||.|||.|..|.|||||.|||||||||||..|.|||||||
BPUM_1568___r    249 TCGCAAAACACCAGAACTGCACTTTGAATTCGATGAATCCGTGGATTACG    298

BSNT_02706___    293 GGAATCGGATCGAAACACTGATTCACGAATTACATTCAGAGAAACCATC-    341
                     |.||.||.||.||||..||.|||...|||.||    .|.|.|||..||| 
BPUM_1568___r    299 GAAACCGAATTGAAAGCCTAATTGCTGAACTA----AACACAAAAGATCA    344

BSNT_02706___    342 TGAATAA    348
                     .||||||
BPUM_1568___r    345 CGAATAA    351


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