Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02707 and BPUM_1569
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:20
# Commandline: needle
# -asequence dna-align/BSNT_02707___truB.1.24716.seq
# -bsequence dna-align/BPUM_1569___truB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02707___truB-BPUM_1569___truB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02707___truB-BPUM_1569___truB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02707___truB
# 2: BPUM_1569___truB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 989
# Identity: 645/989 (65.2%)
# Similarity: 645/989 (65.2%)
# Gaps: 118/989 (11.9%)
# Score: 1978.5
#
#
#=======================================
BSNT_02707___ 1 ATGGTTAACGGAGTTCTCCTTTTACATAAACCTGTTGGCATGACATCGCA 50
|||.|.||.||.|||||..|.|||||||||......||.|||||.||.||
BPUM_1569___t 1 ATGATAAATGGTGTTCTTTTATTACATAAAGAAAGAGGGATGACCTCTCA 50
BSNT_02707___ 51 CGACTGTGTCATGAAGATCCGAAAGCTGTTAAAAACAAAAAAAGTAGGAC 100
|||||||||..|.||..|..|||||.|.||..|.|||||||||||.||||
BPUM_1569___t 51 CGACTGTGTGTTCAAAGTGAGAAAGATATTGCATACAAAAAAAGTGGGAC 100
BSNT_02707___ 101 ATACAGGAACGCTCGATCCGGAAGTGTCAGGCGTGCTTCCGATTTGTGTA 150
|||||||.||.||||||||.||.||.|||||.||.||.||.||||||.|.
BPUM_1569___t 101 ATACAGGTACACTCGATCCCGAGGTATCAGGTGTTCTGCCTATTTGTATC 150
BSNT_02707___ 151 GGAAGAGCGACAAAAATAGTCGAATACTTAACTGAAAAATCTAAAACGTA 200
||.|||||.||.||.||.||||||||.|||||.||.|||||.||||||||
BPUM_1569___t 151 GGGAGAGCAACGAAGATTGTCGAATATTTAACAGATAAATCGAAAACGTA 200
BSNT_02707___ 201 TGATGCAGAAATAACGCTTGGCTTTTCAACCACTACAGAGGATCAAACCG 250
||||||||||||.|||.||||.|||||.||.||.|||||.||.|||||.|
BPUM_1569___t 201 TGATGCAGAAATCACGATTGGTTTTTCTACAACAACAGAAGACCAAACAG 250
BSNT_02707___ 251 GAGAAACGGT---GGAAATAAAG-----------CCTGTCA-ATCACGAC 285
|.||||..|| .||||.|||| |.|.||| |..|.||.
BPUM_1569___t 251 GTGAAATCGTAGAAGAAAAAAAGGTGCAAAACCCCATCTCAGAAGAAGAA 300
BSNT_02707___ 286 ATTGATAAAGCGGATGTAGAAAAGGTTTTAAACAGTTTAAAGGGGAAACA 335
||||||...||| ||.|||||||||.|||| |||.
BPUM_1569___t 301 ATTGATGCTGCG--------------TTGAAACAGTTTCAAGG---AACC 333
BSNT_02707___ 336 A--GAACAAATTCCGCCCATGTATTCCGCTGTAAAAGTAAACGGCAAAAA 383
| |||||||||||.||.||||.|||.||.||.|||.|...|||.|||||
BPUM_1569___t 334 ATTGAACAAATTCCACCTATGTTTTCGGCAGTGAAAATTGGCGGAAAAAA 383
BSNT_02707___ 384 ATTATACGAATACGCAAGAGCAGGGATTGAAGTAGAACGTCCGAAACGT- 432
|.|.||.|||||.|||||||.|||.||||||.|.||.||.||||..|||
BPUM_1569___t 384 ACTCTATGAATATGCAAGAGAAGGCATTGAAATTGAGCGACCGAGCCGTG 433
BSNT_02707___ 433 --AT---GA-TAACCATTGAAGACATTGCCCTGACGACA----------- 465
|| || |.|||.| ||.|..|.|||.|||
BPUM_1569___t 434 AAATTTCGATTCACCGT-------ATCGAGCGGACAACACCTGCTTTATT 476
BSNT_02707___ 466 --GAGATTAAAC---ATCATGGAGAAACCGCAAGCTT--CCGGTTTACAG 508
.|.||..||| |||||..||| || |||.||||
BPUM_1569___t 477 TGAAAATGGAACAGTATCATTTAGA----------TTTACCGTTTTA--- 513
BSNT_02707___ 509 TGACTTGCTCCAAAGGGACCTATGTAAGGACGCTGGCGGTCATG--ATCG 556
||.||.|||||.||.|||||.||.||..|.||||| || ||.|
BPUM_1569___t 514 -----TGTTCAAAAGGAACGTATGTCAGAACCTTAGCGGT--TGATATTG 556
BSNT_02707___ 557 GAGAAAAGCTCGGATATCCGGCTCATATGTCTCATTTAATCCGTACGGCA 606
||.|.||.||.||.|.|||.|||||||||||.||..|.||.||.||.|..
BPUM_1569___t 557 GAAAGAAACTAGGTTTTCCAGCTCATATGTCACACCTCATTCGCACTGGT 606
BSNT_02707___ 607 TCCGGAGATTTTTCTCTCGACGAATGCTTTACTTTTGATGAGCT-CG--- 652
||.||.||||||.|.||.||.||.|||.|.||..|||||||||| ||
BPUM_1569___t 607 TCAGGTGATTTTACACTAGATGAGTGCATCACCCTTGATGAGCTGCGAGA 656
BSNT_02707___ 653 ---AAGCACAGGCCCAATCCGGAACCGTGGAAGAGCATACAGTTCCTATT 699
||||..|| || ||.||.||.||.|||||....||.||.||.
BPUM_1569___t 657 TATAAGCGAAG----AA---GGCACAGTAGATGAGCACCTTGTCCCGATC 699
BSNT_02707___ 700 GAACGTGCGCTCAATCATTTGCCGAAATGGATCATAAGTGATACATTAGC 749
||.|||||||||||||||||||||||||||...||||.||||||||||||
BPUM_1569___t 700 GAGCGTGCGCTCAATCATTTGCCGAAATGGGAGATAAATGATACATTAGC 749
BSNT_02707___ 750 TAAG-AAAGTAGAAAATGGGGCTTTGCTTGAGACGCCCGAGCAGTTTTCT 798
||| |||||.|||||.||.||..|.||....|.|||.||..|.||..||
BPUM_1569___t 750 -AAGTAAAGTGGAAAACGGTGCAGTCCTGCCAATGCCTGATGAATTCGCT 798
BSNT_02707___ 799 GAAATGACA-AGTGAAGACCGTATCGCCGTCTTTACTGAATCTGGAACC- 846
.|..|..|| || |||||.|||.||||.||||||.||...||.|| ||
BPUM_1569___t 799 CATTTCGCAGAG-GAAGATCGTGTCGCTGTCTTTGCTCCTTCAGG--CCG 845
BSNT_02707___ 847 -TGTTTGGCGATCTATTTCCCTCATCCTGCAAAAAAAGGGCTGTTAAAGC 895
|||.|||||||.|||.|....||.||..|.|||.|.....||.|.||||
BPUM_1569___t 846 GTGTATGGCGATATATATGAAGCACCCGACCAAACAGAATTTGATGAAGC 895
BSNT_02707___ 896 CGGCAAAAGTATTGATGCAA--AAAAGCGAAC--AATAG 930
||||.||..|.|| ||...| |.||||.|.| ||
BPUM_1569___t 896 CGGCGAAGATCTT-ATCTCAGGACAAGCAATCTTAA--- 930
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