Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02711 and BPUM_1574
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:21
# Commandline: needle
# -asequence dna-align/BSNT_02711___mlpA.1.24716.seq
# -bsequence dna-align/BPUM_1574___mlpA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02711___mlpA-BPUM_1574___mlpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02711___mlpA-BPUM_1574___mlpA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02711___mlpA
# 2: BPUM_1574___mlpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1246
# Identity: 936/1246 (75.1%)
# Similarity: 936/1246 (75.1%)
# Gaps: 32/1246 ( 2.6%)
# Score: 3381.0
#
#
#=======================================
BSNT_02711___ 1 TTGAT-TAAACGATATACGTGTCAAAATGGTGTAAGAATTGTGCTGGAAA 49
|||.| .||||| |||||.||.|||||.||.|||||||||||.||.||||
BPUM_1574___m 1 TTGGTCAAAACG-TATACATGCCAAAACGGAGTAAGAATTGTACTTGAAA 49
BSNT_02711___ 50 ATAACCCGACAGTCCGTTCTGTTGCGATCGGCGTATGGATCGGCACAGGT 99
|.||.||.||.||..|.|||||.||.||.|||||.|||||.||.||.|||
BPUM_1574___m 50 ACAATCCCACTGTAAGATCTGTCGCAATTGGCGTCTGGATTGGAACGGGT 99
BSNT_02711___ 100 TCGAGACATGAAACGCCGGAGATAAACGGAATTTCTCACTTTTTAGAGCA 149
||.||||||||.||.||.||.||.||||||||.||.||||||.|||||||
BPUM_1574___m 100 TCTAGACATGAGACACCTGAAATTAACGGAATCTCACACTTTCTAGAGCA 149
BSNT_02711___ 150 CATGTTCTTTAAAGGGACGAGCACAAAATCTGCACGCGAGATAGCAGAAT 199
.|||||||||||||||||.|..||.|.|||||||||.||.||.|||||||
BPUM_1574___m 150 TATGTTCTTTAAAGGGACAAAGACGAGATCTGCACGTGATATCGCAGAAT 199
BSNT_02711___ 200 CTTTTGATCGTATTGGCGGCCAGGTCAATGCGTTTACTTCAAAGGAATAT 249
|.|||||.||.||.||.||.||.||.|||||.|||||.|||||.|||||.
BPUM_1574___m 200 CCTTTGACCGCATCGGTGGTCAAGTGAATGCCTTTACGTCAAAAGAATAC 249
BSNT_02711___ 250 ACCTGCTACTATGCAAAGGTGCTTGACGAGCATGCGAATTACGCGCTGGA 299
||.|||||||||||||||||||||||....|||||....|||||.||.||
BPUM_1574___m 250 ACTTGCTACTATGCAAAGGTGCTTGATTCACATGCCGGCTACGCTCTCGA 299
BSNT_02711___ 300 CGTATT-AGCAGATATGTTCTTTCATTCAACGTTTGATGAAAACGAGCTG 348
.||||| ||| ||||||||.||.|||||..|.|||||||||.|.||||||
BPUM_1574___m 300 TGTATTGAGC-GATATGTTTTTCCATTCCGCTTTTGATGAAGAAGAGCTG 348
BSNT_02711___ 349 AAAAAAGAGAAAAATGTAGTATATGAAGAAATTAAAATGTATGAAGATGC 398
||||||||.|||||||||||||||||||||||.|||||||||||||||.|
BPUM_1574___m 349 AAAAAAGAAAAAAATGTAGTATATGAAGAAATCAAAATGTATGAAGATAC 398
BSNT_02711___ 399 GCCGGACGACATTGTACATGATTTATTGAGCAAAGCCACTTACGGCAATC 448
|||.||.||.||.||.||||||.|.|||||||||||.|..||.||..|||
BPUM_1574___m 399 GCCTGATGATATCGTTCATGATCTGTTGAGCAAAGCGATCTATGGTGATC 448
BSNT_02711___ 449 ATTCTTTAGGCTACCCAATTCTAGGCACGGAAGAAACGCTTGCTTCCTTT 498
||||||||||.|.|||.|||.||||.||.||||||||.|||.||.|||||
BPUM_1574___m 449 ATTCTTTAGGGTTCCCGATTTTAGGAACAGAAGAAACACTTTCTACCTTT 498
BSNT_02711___ 499 AACGGTGACTCTCTCAGACAATACATGCATGATTATTATACGCCGGACCG 548
||||||||||||||.|||...||.|||.||||.|..||.|||||||||||
BPUM_1574___m 499 AACGGTGACTCTCTTAGAGCTTATATGGATGAATTCTACACGCCGGACCG 548
BSNT_02711___ 549 AGTGGTGATTTCGGTAGCGGGCAATATATCTGACAGTTTTATCAAAGATG 598
.||.||.||.||.||.||.||.|||.||..|||||..||.||.|..||.|
BPUM_1574___m 549 CGTCGTCATCTCTGTTGCAGGGAATGTAGATGACACATTCATTAGTGAAG 598
BSNT_02711___ 599 TAGAAAAATGGTTCGGGTCATACGAGGCGAAAGGCAAAGCGACAGGCCTT 648
|.|||||.|.||||||.||.||.||..|||||||.||| ..||| ||||.
BPUM_1574___m 599 TTGAAAAGTTGTTCGGTTCGTATGAAACGAAAGGGAAA-AAACA-GCCTG 646
BSNT_02711___ 649 GAGAA--GCCTGAGTTCCACACGGAAAAACTGACGAGAAAAAAAGAAACA 696
.|||| |||..||||.|||...||.||.||.||..|.|||||.||||||
BPUM_1574___m 647 TAGAAGCGCCGCAGTTTCACTATGACAAGCTCACACGCAAAAAGGAAACA 696
BSNT_02711___ 697 GAGCAGGCTCATTTGTGCCTTGGATTTAAAGG-CTTAGAGGTTGGCCATG 745
|||||.||.|||.|.|||.|.||.|||||.|| |||..| |.|||..||.
BPUM_1574___m 697 GAGCAAGCGCATCTATGCATGGGCTTTAATGGCCTTCCA-GCTGGAGATA 745
BSNT_02711___ 746 AACGTATTTATGATTTAATCGTCCTCAACAATGTGCTCGGAGGCAGCATG 795
||.|.||.|||||.|||||||||.|.||.|||||.||.||.||.||||||
BPUM_1574___m 746 AAGGCATCTATGACTTAATCGTCTTAAATAATGTTCTTGGCGGAAGCATG 795
BSNT_02711___ 796 AGCAGCCGGCTGTTCCAAGATGTGCGTGAAGATAAAGGACTTGCTTATTC 845
||||||||..|||||||.|||||..|.|||||.|||||.||.||.|||||
BPUM_1574___m 796 AGCAGCCGCTTGTTCCAGGATGTAAGAGAAGACAAAGGCCTCGCATATTC 845
BSNT_02711___ 846 TGTTTACAGCTATCACAGCTCATATGAGGACAGCGGAATGCTCACTATTT 895
|||||..|||||||||||.||||.||..||.|.|||.|||||.||.||||
BPUM_1574___m 846 TGTTTTTAGCTATCACAGTTCATTTGCAGATAACGGCATGCTGACGATTT 895
BSNT_02711___ 896 ACGGTGGAACGGGTGCAAATCAG-----CTTCAGCAGCTGTCGGAAACAA 940
|.||.||.||.||.||.||.||| ||| |||.||.|||||.|
BPUM_1574___m 896 ATGGCGGGACTGGAGCGAAGCAGTTAAACTT-----GCTCTCTGAAACCA 940
BSNT_02711___ 941 TTCAAGAAACCCTTGCCACATTAAAACGTGACGGCATTACCTCAAAAGAA 990
||..|.||||.||.|.|...|||||.|||||.||.||.||...||||||.
BPUM_1574___m 941 TTTTACAAACGCTAGACGTCTTAAAGCGTGAGGGAATCACACAAAAAGAG 990
BSNT_02711___ 991 CTGGAAAACAGCAAAGAGCAAATG-AAGGGAAGCTTAATGCTGAG-CTTA 1038
||.||||||...||.||||||||| ||||||| |.|||||||.|| |||
BPUM_1574___m 991 CTTGAAAACTCTAAGGAGCAAATGAAAGGGAA-CCTAATGCTCAGTCTT- 1038
BSNT_02711___ 1039 GAAAGCACAAACAGCAAAATGAGCCGAAACGGAAAAAATGAACTGCTGCT 1088
|||||||||||||||||.||||||||||||||.||||||||||||||.||
BPUM_1574___m 1039 GAAAGCACAAACAGCAAGATGAGCCGAAACGGTAAAAATGAACTGCTCCT 1088
BSNT_02711___ 1089 CGGCAAACATAAAACATTAGATGAAATCATCAATGAATTAAACGCCGTGA 1138
.|||||||||...||..|.||||||||.||..|.|||.|.|||...||.|
BPUM_1574___m 1089 TGGCAAACATCGTACGCTTGATGAAATTATTGACGAAATTAACAAAGTCA 1138
BSNT_02711___ 1139 ACTTAGAGCGTGT---TAACGGCCTT-GCCAGACAATTGTTTACCGAAGA 1184
..|||||..|||| ||| ||| .|.|.||.|.|.|||||.||.||
BPUM_1574___m 1139 CATTAGACGGTGTGAATAA----CTTATCAAAACGAATCTTTACAGAGGA 1184
BSNT_02711___ 1185 CTATGCATTAGCACTTATCAGCCCTTCCGGCAATATGCCGTCTTAA 1230
.|||||..|..|.|||||.||.|||.|.||..||..|||.||.|||
BPUM_1574___m 1185 TTATGCGCTCTCGCTTATTAGTCCTACGGGTGATCAGCCATCATAA 1230
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