Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02715 and BPUM_1577
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:21
# Commandline: needle
# -asequence dna-align/BSNT_02715___spoVFA.1.24716.seq
# -bsequence dna-align/BPUM_1577___spoVFA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02715___spoVFA-BPUM_1577___spoVFA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02715___spoVFA-BPUM_1577___spoVFA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02715___spoVFA
# 2: BPUM_1577___spoVFA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 933
# Identity: 658/933 (70.5%)
# Similarity: 658/933 (70.5%)
# Gaps: 69/933 ( 7.4%)
# Score: 2129.0
#
#
#=======================================
BSNT_02715___ 1 ATGTTAACCGGATTGAAAATTGCAGTTATCGGCGGTGACGCAAGACAGCT 50
|||||.|.|||.||.|...||||.||.|||||.||.||.|||||.|||||
BPUM_1577___s 1 ATGTTGAGCGGTTTAACGGTTGCGGTGATCGGGGGAGATGCAAGGCAGCT 50
BSNT_02715___ 51 CGAAATTATAAGAAAGCTCACTGAACAGCAGGCTGACA---TCTATCTTG 97
.||||||||..|.|||||..| |||||||..||.|| |.|.|.|.|
BPUM_1577___s 51 TGAAATTATTCGCAAGCTGTC---ACAGCAGCATGCCAAAGTGTTTTTGG 97
BSNT_02715___ 98 TCGGTTTTGACCAATTGGATCACGGTTTTACCGGGGCAGTAAAATGC-AA 146
|.||.|||||.||..||||||||||.||||..||||| |.|||.|| ||
BPUM_1577___s 98 TTGGATTTGATCAGCTGGATCACGGATTTATTGGGGC--TGAAAAGCTAA 145
BSNT_02715___ 147 TATTGAT--GAAATTCCTTTTCAGCAAATAGACAGCATCATTCTTCCAGT 194
.|.|| | |||.||||.||..|.||..|||||||.||.||.||.||.||
BPUM_1577___s 146 AAATG-TCAGAACTTCCATTCGAACAGGTAGACAGTATGATCCTGCCGGT 194
BSNT_02715___ 195 ATCCGCGACAACAGGA-GAAGGTGTCGTATCAACTGTATTTTCTAATGAA 243
|||.|.|.|||| ||| ||||||||.||..|.||.||.||.||.|||| |
BPUM_1577___s 195 ATCAGGGGCAAC-GGATGAAGGTGTTGTCGCGACAGTTTTCTCAAATG-A 242
BSNT_02715___ 244 GAAGTTGTGTTA--AAACAGGACCA--TCTCGACAGAACGCCTGCACATT 289
|.|| |||||| |.| ||.|.|| |.|.||.|||||.|||||.||||
BPUM_1577___s 243 GCAG--GTGTTACTAGA-AGCAACATTTTTAGAAAGAACCCCTGCCCATT 289
BSNT_02715___ 290 GTGTCATTTTCTCAGGCATTTCTA--ACGTCTATTTAGAAAACATTGCAG 337
||..|.|.|.||||||.||||||| ||| ||.|||||.||..|.|||.
BPUM_1577___s 290 GTACCTTGTACTCAGGTATTTCTAATACG--TACTTAGACAATCTGGCAA 337
BSNT_02715___ 338 CTCAGGCAAAAAGAAAACTTGTTAAACTGTTTGAGCGGGATGACATTGCG 387
..||||..||..||||.|||||.||||||||||||||.|||||.|||||.
BPUM_1577___s 338 AGCAGGTGAATCGAAATCTTGTGAAACTGTTTGAGCGAGATGATATTGCC 387
BSNT_02715___ 388 ATATACAACTCTATTCCGACTGTAGAAGGAACGATCATGCTGGCTATTCA 437
|||||.|||||||||||.||.||.|||||.|..||||||.||||.||.||
BPUM_1577___s 388 ATATATAACTCTATTCCAACAGTTGAAGGGATTATCATGATGGCCATCCA 437
BSNT_02715___ 438 GCACACGGATTATACGATACACGGATCACAGGTGGCCGTTCTCGGTCTGG 487
|||.||||||||||||||.||.|||||||..||.||.||||||||.||.|
BPUM_1577___s 438 GCAAACGGATTATACGATTCATGGATCACGAGTTGCTGTTCTCGGACTCG 487
BSNT_02715___ 488 GGCGCACCGGGA-TGACGATTGCCCGTACATTTGCCGCGCTCGGGGCGAA 536
|..| |.||||| |.||.||||||||.||||||...||.|||||.|||.|
BPUM_1577___s 488 GAAG-AACGGGACTTACCATTGCCCGCACATTTCGGGCACTCGGTGCGGA 536
BSNT_02715___ 537 TGTAAAAGTGGGGGC--AAGAAGTTCAGCGCATCTGGCACGTATCACTGA 584
|||||||||.||||| .||| |.||||||||.|.|||||...|..|||
BPUM_1577___s 537 TGTAAAAGTAGGGGCGGCAGA--TACAGCGCATTTAGCACGGGCCTTTGA 584
BSNT_02715___ 585 AATGGGGCTCGTTCC-TTTTCATACCGATG----AGCTGAAAGAGCATGT 629
||||||.||||.||| |||||| ||| ||.|.|||||..|.||
BPUM_1577___s 585 AATGGGACTCGATCCATTTTCA-----ATGGACCAGTTAAAAGAAGAAGT 629
BSNT_02715___ 630 AAAAGATATAGATATTTGCATTAATACCATACCGAGTATGATTTTAAATC 679
||..|||.|||||||...|||.||||||||.||.||..|..|.|||.||.
BPUM_1577___s 630 AACGGATGTAGATATCGTCATCAATACCATTCCAAGCCTTGTATTAGATT 679
BSNT_02715___ 680 AAACGGTACTT--TCTAGCATGACACCAAAAACCTTAATATTGGATCTGG 727
.|.|.|| |.| || ||||||||||||||.||..|.||.||||||.|.|
BPUM_1577___s 680 CATCTGT-CATCGTC-AGCATGACACCAAAGACACTCATTTTGGATATCG 727
BSNT_02715___ 728 CCTCACGTCCCGGGGGAACGGATTTTAAATATGCCGAGAAACAAGGGATT 777
||||.||.||.||.|||||.||.|||.|.|.|||..|.|||||.||..|.
BPUM_1577___s 728 CCTCCCGCCCAGGAGGAACAGACTTTGACTTTGCACAAAAACACGGAGTG 777
BSNT_02715___ 778 AAAGCACTTCTTGCTCCCGGGCTTCCAGGGATTGTCGCTCCTAAAACAGC 827
||.||.||||||||.||.||.||.||.||.|||||.||.||.||.|||||
BPUM_1577___s 778 AAGGCGCTTCTTGCACCTGGACTCCCCGGAATTGTTGCACCAAAGACAGC 827
BSNT_02715___ 828 TGGGCAAATCCTTGCAAACGT-CT---TGAGCAAGCTTTTGGCTGAAATA 873
.|||||||||.|||||||.|| || ||.|| .|||.|| ||| |
BPUM_1577___s 828 AGGGCAAATCATTGCAAAAGTGCTTTCTGGGC--TCTTATG--TGA---A 870
BSNT_02715___ 874 CAAGCTGAGGA------GGGGA---AATAA--- 894
|..||.||||| ||||| |||.|
BPUM_1577___s 871 CTTGCAGAGGAAAAAAGGGGGATGGAATCATGA 903
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